HsaEX7106901 @ hg38
Exon Skipping
Gene
ENSG00000132958 | TPTE2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:HGNC Symbol;Acc:HGNC:17299]
Coordinates
chr13:19473914-19492903:-
Coord C1 exon
chr13:19492850-19492903
Coord A exon
chr13:19482488-19482547
Coord C2 exon
chr13:19473914-19474075
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTGGTGGCTAAAGTAT
3' ss Score
0.9
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
CCCACACACAAGTGAATTTAAAGGAGCAGCCCTGGTGTCACCTATCAGTAAAAG
Seq A exon
TATGTTAGAACGACTTTCCAAGTTTGAAGTTGAAGATGCTGAAAATGTTGCTTCATATGA
Seq C2 exon
AATATTTGGAGTTTTCCTGGTCTTACTGGATGTCACTCTCCTCCTTGCCGACCTAATTTTCACTGACAGCAAACTTTATATTCCTTTGGAGTATCGTTCTATTTCTCTAGCTATTGGCTTATTTTTTCTCATGGATGTTCTTCTTCGAGTATTTGTAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132958-'7-23,'7-13,8-23=AN
Average complexity
A_C3
Mappability confidence:
94%=100=85%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(19.2=36.4)
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGGTGTCACCTATCAG
R:
GCCAATAGCTAGAGAAATAGAACGA
Band lengths:
145-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains