MmuEX6034812 @ mm10
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22318327-22325546:+
Coord C1 exon
chr8:22318327-22318377
Coord A exon
chr8:22320856-22320921
Coord C2 exon
chr8:22325496-22325546
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGCATTTGTTGCTGCTAAAGCAA
3' ss Score
1.23
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTCCTTATCTGATTTATCATCAGATTACCAGGAAGAGCAAATGAACAAATG
Seq A exon
CAAGTTAAACCAGATGTCCAAGTTGTACGACGATGATGAACGTACTGATATTCAAAAGTCATACTG
Seq C2 exon
GAATGTGGTTAAGAAATTTGTGCGCATCCTTGTGTCCTCGGTTGCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'7-13,'7-11,17-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCCCCTGTTATGTCGAA
R:
TCAGAGACATTTAGATCGACAACCAC
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types