MmuEX6034811 @ mm10
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22320856-22327805:+
Coord C1 exon
chr8:22320856-22320921
Coord A exon
chr8:22325496-22325546
Coord C2 exon
chr8:22327644-22327805
Length
51 bp
Sequences
Splice sites
3' ss Seq
AGTTTTACTAACTTTTCTAGGAA
3' ss Score
7.34
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CAAGTTAAACCAGATGTCCAAGTTGTACGACGATGATGAACGTACTGATATTCAAAAGTCATACTG
Seq A exon
GAATGTGGTTAAGAAATTTGTGCGCATCCTTGTGTCCTCGGTTGCCTTCAG
Seq C2 exon
AATATTTGGAATTTTCCTGGTCATTCTGGATGTATTTCTTGTGGTTGTCGATCTAAATGTCTCTGAAAAGAAAATTTATATTCCTTTGGACTATCGTTCCATTTCTTTAGCGATTGCTTTATTTTTCCTCGTGGATGTTCTTCTTAGAGTGTCTGTAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'7-13,'7-12,18-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(20.6=38.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGTTATGTCGAATTCCT
R:
TCGACAACCACAAGAAATACATCCA
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types