MmuEX6034811 @ mm9
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:23431328-23438277:+
Coord C1 exon
chr8:23431328-23431393
Coord A exon
chr8:23435968-23436018
Coord C2 exon
chr8:23438116-23438277
Length
51 bp
Sequences
Splice sites
3' ss Seq
AGTTTTACTAACTTTTCTAGGAA
3' ss Score
7.34
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CAAGTTAAACCAGATGTCCAAGTTGTACGACGATGATGAACGTACTGATATTCAAAAGTCATACTG
Seq A exon
GAATGTGGTTAAGAAATTTGTGCGCATCCTTGTGTCCTCGGTTGCCTTCAG
Seq C2 exon
AATATTTGGAATTTTCCTGGTCATTCTGGATGTATTTCTTGTGGTTGTCGATCTAAATGTCTCTGAAAAGAAAATTTATATTCCTTTGGACTATCGTTCCATTTCTTTAGCGATTGCTTTATTTTTCCTCGTGGATGTTCTTCTTAGAGTGTCTGTAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'13-14,'13-12,14-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(20.6=38.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTAAACCAGATGTCCAAGTTGT
R:
TCAGAGACATTTAGATCGACAACCAC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: