MmuEX0048665 @ mm9
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:23435968-23443756:+
Coord C1 exon
chr8:23435968-23436018
Coord A exon
chr8:23438116-23438277
Coord C2 exon
chr8:23443637-23443756
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTCCACTCTATTTCTTTTAGAAT
3' ss Score
8.84
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAATGTGGTTAAGAAATTTGTGCGCATCCTTGTGTCCTCGGTTGCCTTCAG
Seq A exon
AATATTTGGAATTTTCCTGGTCATTCTGGATGTATTTCTTGTGGTTGTCGATCTAAATGTCTCTGAAAAGAAAATTTATATTCCTTTGGACTATCGTTCCATTTCTTTAGCGATTGCTTTATTTTTCCTCGTGGATGTTCTTCTTAGAGTGTCTGTAGAAGG
Seq C2 exon
GAGACGGCGCTATTTCTCTGACGTACTGAACACCCTAGACGCTGTGGTCATCGGTGTGACTGTGGTTGTGGCTGTCATTTATGCACTTTATGACAAACACTTTCTCAGAGATATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.6=38.2)
C2:
PF0052026=Ion_trans=FE(39.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGGTTAAGAAATTTGTGCGCA
R:
CTTGGGATATCTCTGAGAAAGTGT
Band lengths:
170-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: