BtaEX0000430 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MYA3]
Coordinates
chr12:21755757-21759588:+
Coord C1 exon
chr12:21755757-21755806
Coord A exon
chr12:21757860-21758021
Coord C2 exon
chr12:21759469-21759588
Length
162 bp
Sequences
Splice sites
3' ss Seq
AGTCTATTTGTTTGTTATAGAAT
3' ss Score
7.08
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AGCAAGATAAAGAGAATTGTGTACTTAATTATATCATCCTTCACTTTCAG
Seq A exon
AATATTTGCAATCTTGCTGATCTTTCTGGACATGGCCCTCATCATCAAAGATGTAATTTTCCTTAGTGGCACGACACAGATTTCTTTGGAATCTCGTTCAGTTTCTTTTGTTATTGCTTTTTTTTTTTTCATGGATGTTTCTCTTCGAGTGTTTATAGAAGG
Seq C2 exon
GATACGACCATATTTTTCTGATATATTTAACTCCTTAGATGCTGCCATTATTATTGTGACTCTACTGGTTGATATCACTTATCTTTTGTATGACTCTATACTTGCTAAAATTTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011654-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGATAAAGAGAATTGTGTACTT
R:
CTGGGGAAAATTTTAGCAAGTATAGA
Band lengths:
170-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development