GgaEX1003678 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:174771043-174772388:+
Coord C1 exon
chr1:174771043-174771090
Coord A exon
chr1:174771756-174771917
Coord C2 exon
chr1:174772269-174772388
Length
162 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTCCCCTCACAGAGT
3' ss Score
10.42
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
TACCATTAGGAGAAAAATTTCCCCGTTTGTGATGTCATTTGGATTCAG
Seq A exon
AGTATTTGGAGTTGTGCTTATCATTGTAGACATCATAGTGGTGATTGTGGATCTGGCCATCAGTGAGAAGAAAAGAGGCATTAGAGAGATTCTTGAAGGTGTTTCCCTGGCTATAGCACTCTTCTTCCTTGTTGATGTTCTCATGAGAGTGTTTGTTGAAGG
Seq C2 exon
CTTCAAGAACTATTTCCGGTCCAAACTGAATACTTTGGATGCAGTCATAGTAGTGGGCACTCTGCTAATTAATATGACCTACTCCTTCTCTGACCTTGCTGCCACAGATCAGATGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031-'5-3,'5-2,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(17.7=36.4)
C2:
PF0052026=Ion_trans=FE(35.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTAGGAGAAAAATTTCCCCGT
R:
GCATCTGATCTGTGGCAGCAA
Band lengths:
163-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]