DreEX0080913 @ danRer10
Exon Skipping
Gene
ENSDARG00000056985 | tpte
Description
transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
Coordinates
chr10:24723080-24725039:+
Coord C1 exon
chr10:24723080-24723127
Coord A exon
chr10:24723257-24723418
Coord C2 exon
chr10:24724920-24725039
Length
162 bp
Sequences
Splice sites
3' ss Seq
TACTTTCATTATGTTTGCAGTGT
3' ss Score
5.62
5' ss Seq
GGGGTTAGT
5' ss Score
2.75
Exon sequences
Seq C1 exon
TCAGGTCCGGAAAAAGATAACTCCTTTTGTGATGTCCTTTGGTTTTCG
Seq A exon
TGTTTTTGGCCTGGTACTGATCATCTTGGACATCATTATGGTCATTGTGGACTTGTCTCTTTCTGAGAAGAGTCGTGATGTTGGAGGTGCACTGGAGACTGTTTCTCTGGTCATCTCTTTCTTTTTCCTCATCGATGTATTGCTCCGTGTTTATGTGGAGGG
Seq C2 exon
ATTCAAAGTGTATTTCAGCTCAAAACTGAATATAGTAGATGCTTGTATTGTGGTCATTACTCTGGTGGTCACCATGATCTACGCATTCTCCGATTTCTCAGGAGCCAGTCTGATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056985-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.8=38.2)
C2:
PF0052026=Ion_trans=FE(39.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCCGGAAAAAGATAACTCCT
R:
GGGAATCAGACTGGCTCCTGA
Band lengths:
165-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]