RnoEX0093124 @ rn6
Exon Skipping
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74617093-74623863:-
Coord C1 exon
chr16:74623798-74623863
Coord A exon
chr16:74619026-74619076
Coord C2 exon
chr16:74617093-74617254
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATTTAATTTTACTTTTATAGGAG
3' ss Score
8.29
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CAAGTTAAACCAGATCTCCAAGCTGTACGACGAGGACGAGCATGTTGACATCCGAGAGTCATACTG
Seq A exon
GAGCACAGTTAAGAAATTTGTGCATTTCCTTGTGTCCTCAGTTGCCTTCAG
Seq C2 exon
AATATTTGGAATACTCCTGATCTTTCTGGATGTATTTCTTGTGGCTATCGATCTACATGCCACTGAAAAGAATATTTATATTCCTTTGGAATATCGGGCCATTTCTTTAGCTATTGCTTTATTTTTCCTTGTGGATGTTCTTCTCCGAGTGTATGTAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-'17-18,'17-16,18-18
Average complexity
S
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(20.6=38.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGCATGTTGACATCCGAG
R:
TGGCCCGATATTCCAAAGGAA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]