HsaEX7108007 @ hg38
Exon Skipping
Gene
ENSG00000109061 | MYH1
Description
myosin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:7567]
Coordinates
chr17:10512867-10513913:-
Coord C1 exon
chr17:10513821-10513913
Coord A exon
chr17:10513626-10513689
Coord C2 exon
chr17:10512867-10512965
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTTTTACTTACAAGGGT
3' ss Score
6.01
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGGACTCTGGAAGATCAAATCATCAGTGCCAACCCCCTACTGGAGGCCTTTGGCAACGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTT
Seq A exon
GGTAAATTCATCAGGATCCACTTCGGTACCACAGGGAAACTGGCTTCTGCTGATATTGAAACAT
Seq C2 exon
ATCTTCTGGAGAAGTCTAGAGTTACTTTCCAGCTAAAGGCTGAAAGAAGCTATCATATTTTTTATCAGATCATGTCTAACAAGAAGCCAGATCTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCATCAGTGCCAACCCCC
R:
TGATAGCTTCTTTCAGCCTTTAGC
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains