MmuEX7034401 @ mm10
Exon Skipping
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67204563-67205600:+
Coord C1 exon
chr11:67204563-67204655
Coord A exon
chr11:67204768-67204831
Coord C2 exon
chr11:67205502-67205600
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCATCTTTTTCCCTTCCAAGGGT
3' ss Score
8.92
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGGACGCTGGAGGACCAAATCATCAGCGCCAACCCCCTGCTGGAGGCCTTTGGGAACGCCAAGACCGTGAGGAATGACAACTCTTCCCGCTTT
Seq A exon
GGTAAGTTCATCAGGATCCACTTTGGTACCACAGGGAAACTGGCTTCTGCTGATATTGAAACAT
Seq C2 exon
ATCTTCTGGAGAAGTCTAGAGTCACTTTCCAGCTAAAAGCTGAGAGAAGCTACCACATTTTTTACCAGATTATGTCTAACAAGAAGCCGGATCTAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-'1-21,'1-10,9-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAAATCATCAGCGCCAAC
R:
AATGTGGTAGCTTCTCTCAGC
Band lengths:
140-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types