RnoEX0056935 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53745239-53746707:+
Coord C1 exon
chr10:53745239-53745331
Coord A exon
chr10:53745445-53745508
Coord C2 exon
chr10:53746569-53746707
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCATCTTCTTCCCTTCCAAGGGT
3' ss Score
9.08
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGGACCCTGGAGGATCAAATCATCAGTGCCAATCCTCTGCTGGAAGCCTTCGGGAATGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTT
Seq A exon
GGTAAATTCATCAGGATCCACTTTGGTACCACAGGGAAGCTGGCTTCTGCTGATATTGAAACAT
Seq C2 exon
AGTGCCATTGATATTCTGGGCTTCACTTCTGATGAAAGAGTCTCCATCTATAAGCTCACGGGGGCTGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAACGTGAGGAGCAGGCTGAGCCGGATGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-35/41=34-38
Average complexity
C2
Mappability confidence:
94%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAATCCTCTGCTGGAAG
R:
CAGCCCCCGTGAGCTTATAGA
Band lengths:
135-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]