DreEX6096662 @ danRer10
Exon Skipping
Gene
ENSDARG00000098747 | CU633479.1
Description
NA
Coordinates
chr24:41042377-41042791:-
Coord C1 exon
chr24:41042699-41042791
Coord A exon
chr24:41042553-41042616
Coord C2 exon
chr24:41042377-41042475
Length
64 bp
Sequences
Splice sites
3' ss Seq
ACAACATTGTTTTCGAACAGGGC
3' ss Score
7.85
5' ss Seq
CTTGTAAGA
5' ss Score
4.17
Exon sequences
Seq C1 exon
GGTACTCTGGAGGATCAAATCATCCAGTGTAATCCTGCTCTGGAGGCTTTCGGGAATGCCAAGACCATCAGGAATGACAATTCATCTCGCTTT
Seq A exon
GGCAAATTCATTCGAATACACTTTGCTGCTAGTGGAAAGCTAGCTTCTGCTGATATTGAGACTT
Seq C2 exon
ATCTCCTGGAGAAGTCTCGTGTGACTTTCCAGCTCAAGGCTGAGAGAGATTATCACATCTTCTACCAGATTCTGTCTCAGAAGAAACCAGAACTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098747-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATGCCAAGACCATCAGG
R:
AGTTCTGGTTTCTTCTGAGACAGA
Band lengths:
136-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]