Special

GgaEX1037862 @ galGal4

Exon Skipping

Gene
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_989559]
Coordinates
chr18:487235-488429:-
Coord C1 exon
chr18:488337-488429
Coord A exon
chr18:487494-487557
Coord C2 exon
chr18:487235-487333
Length
64 bp
Sequences
Splice sites
3' ss Seq
CAATTTTTATCCATTCAAAGGGG
3' ss Score
5.04
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GGAACGCTTGAGGATCAAATCATCAGCGCCAACCCATTGCTAGAGGCCTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCCTCACGCTTT
Seq A exon
GGGAAATTCATCAGAATTCACTTTGGTGCCACAGGAAAACTAGCTTCTGCAGATATTGAAACAT
Seq C2 exon
ATCTATTGGAGAAGTCTAGAGTCACTTTTCAGCTGAAGGCAGAAAGAAGCTACCACATATTTTATCAAATTATGTCCAACAAGAAACCAGAGCTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028134-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATCAGCGCCAACCCATT
R:
TGTGGTAGCTTCTTTCTGCCT
Band lengths:
133-197
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]