Special

MmuEX7034396 @ mm10

Exon Skipping

Gene
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67176537-67177451:+
Coord C1 exon
chr11:67176537-67176629
Coord A exon
chr11:67177171-67177234
Coord C2 exon
chr11:67177353-67177451
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATATTAGTTTTCCTTTCAAGGGT
3' ss Score
7.43
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGGACGCTGGAGGACCAAATCATCAGTGCCAACCCCCTGCTGGAGGCCTTTGGGAACGCCAAGACCGTGAGGAATGACAACTCGTCTCGCTTT
Seq A exon
GGTAAATTCATCAGGATCCACTTTGGCACTACGGGGAAACTGGCATCTGCTGACATCGAGACCT
Seq C2 exon
ATCTGCTAGAGAAGTCCCGGGTCACTTTCCAGCTTAAGGCGGAAAGAAGCTACCATATATTTTATCAGATCACATCCAACAAGAAGCCAGAGCTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-'1-18,'1-7,9-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTGGAGGACCAAATCATC
R:
CCGCCTTAAGCTGGAAAGTGA
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types