Special

BtaEX6087187 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30159345-30160119:-
Coord C1 exon
chr19:30160027-30160119
Coord A exon
chr19:30159561-30159624
Coord C2 exon
chr19:30159345-30159443
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATATTAACTTTTCCTTCAAGGGT
3' ss Score
7.53
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGGACTCTGGAGGATCAGATCATCAGTGCCAATCCACTGCTTGAGGCCTTTGGCAACGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTT
Seq A exon
GGTAAATTCATTAGAATCCACTTTGGCACTACAGGAAAACTGGCCTCTGCTGATATTGAAACAT
Seq C2 exon
ATCTGTTAGAGAAGTCTAGAGTTACTTTCCAGCTTAAGGCTGAAAGGAGCTATCATATTTTTTACCAGATCACATCAAACAGGAAACCAGAACTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACTGCTTGAGGCCTTTG
R:
TTCCTGTTTGATGTGATCTGGT
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]