GgaEX1037862 @ galGal3
Exon Skipping
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:496007-497201:-
Coord C1 exon
chr18:497109-497201
Coord A exon
chr18:496266-496329
Coord C2 exon
chr18:496007-496105
Length
64 bp
Sequences
Splice sites
3' ss Seq
CAATTTTTATCCATTCAAAGGGG
3' ss Score
5.04
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GGAACGCTTGAGGATCAAATCATCAGCGCCAACCCATTGCTAGAGGCCTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCCTCACGCTTT
Seq A exon
GGGAAATTCATCAGAATTCACTTTGGTGCCACAGGAAAACTAGCTTCTGCAGATATTGAAACAT
Seq C2 exon
ATCTATTGGAGAAGTCTAGAGTCACTTTTCAGCTGAAGGCAGAAAGAAGCTACCACATATTTTATCAAATTATGTCCAACAAGAAACCAGAGCTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATCAGCGCCAACCCATT
R:
TGTGGTAGCTTCTTTCTGCCT
Band lengths:
133-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]