HsaEX6021060 @ hg19
Exon Skipping
Gene
ENSG00000125414 | MYH2
Description
myosin, heavy chain 2, skeletal muscle, adult [Source:HGNC Symbol;Acc:7572]
Coordinates
chr17:10446192-10447120:-
Coord C1 exon
chr17:10447028-10447120
Coord A exon
chr17:10446415-10446478
Coord C2 exon
chr17:10446192-10446290
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATATTAGCTTTTATTTCAAGGGT
3' ss Score
4.71
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGGACTCTGGAAGATCAAATCATCAGTGCCAACCCCCTACTGGAGGCCTTTGGCAACGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTT
Seq A exon
GGTAAATTCATCAGAATCCACTTTGGCACTACTGGAAAACTGGCATCTGCTGATATTGAAACAT
Seq C2 exon
ATCTGCTAGAGAAGTCTAGAGTTGTTTTCCAGCTTAAGGCTGAGAGAAGTTATCATATTTTTTACCAGATTACATCGAATAAGAAACCAGAACTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCATCAGTGCCAACCCCC
R:
TGATAACTTCTCTCAGCCTTAAGC
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)