HsaEX7108653 @ hg38
Exon Skipping
Gene
ENSG00000124203 | ZNF831
Description
zinc finger protein 831 [Source:HGNC Symbol;Acc:HGNC:16167]
Coordinates
chr20:59146231-59194757:+
Coord C1 exon
chr20:59146231-59146374
Coord A exon
chr20:59159652-59160895
Coord C2 exon
chr20:59190984-59194757
Length
1244 bp
Sequences
Splice sites
3' ss Seq
CTTCCTGTTCCCTCGCACAGGGC
3' ss Score
10.23
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CAGTCGGTTTTTCTCTAGAGAAGGCATAAAGAGAAGCAGAGGCAGAGATGGGACGAGCAGGGAGAATGCTCCTGCCTCATCGGAGCCACCGGTTTTCGGGAGAGAGCGGCAGCCCCCACCTGCCTGTGGACTGAGCACTTAAAG
Seq A exon
GGCTGGTGATGATCAACCTCTTCTGACAATGGAGAGAGCATGCGGTGGATGTTAGGGGAACCAAACCCCAAGAGGGAACCAGCTTCAGTGGAAAGCGGAGTGCGTGCCTCCCCGAGGCAGGGCATTGCTGAGCCCCAGAGAGGAGCCCTGGGTTCCGCTGCCTCCCCCACAGGACAAGGCATGACAGCACCTGCATTGGAATATAGACTGTGCTTTGGAGCCTTTGGCATCAGCTTCCACCTGGTGCGTAAGTCTGTGGTCTCTCCAGCAAGTTCAGGGAAGTGAGGGAGTCGCAGTTCTCTGTCATTCAGCAGGTGTGGACTGAGGGCTGGCTCTGTGCCAGGCCCTGTGCTGGATGCTGGGTTCCATTGTGAGGCCAGGCACAGCCAAGGCAGAGACGAACATTCCTACAGTCGCTCACGACACCAAGCTCCACAGACCAGAGAATGGACGGATCCACAGGAACGAAAGACAGGCTGTCAGGTGCCCAGCCCTGGGGAGACTCCAGAAGAGGAGAGAGGACCACCCATCATGGCTGACCTTGGGAGGACTTGGGTCTTCACAAATTGTGTTCCTTGGTATATATAAGAGGGTTAAAATAGACACAAGAAATATCCATCTATTCCCATTCATTTATTTGACACATACTCTTGGGGCCATGAGTTCAATTCCCAGAAGAGGATCATGATGGTGGGGGGAGGAAGGATGTGGCGAGGGGCCGTGCAGGAGCCCAGGGGGCTTGTCTCATGGACGCTCTTGATCGAATTCCTCTGAGGCCCCAGAGGTGCTCCTTCATCCCCAGCTTGCTTGTGAGGCTGCGTTGGCTCCCCAAGGCCGAGTTTCCTGCTGAGACCCAGCCACACACTTAGCCCTGAGTGTACCAGGTGGCTCCACTCAGAGCGCTGCTCCAGCCCCTCTCCCTGGGGCTTCCTGCCACGTGACTGCACATTTGGGGTCTGGAGAAGGGCCCAGGGACTGAACTGCAAAGGTGAAGGGTGTCCCTGCTCCTCCTGACCACAGCTTCTGGACTGGCATGTGTGTCTGATGGTGCAAGACCAGAGGGGCATGGCCAATGAGAGAGTTATTCTTTCTACCCGTGAGTCTCCCTCGGACACACAGGATTTCTCATGTCTCCTCCTGGTTTTGCTGCTTTTTTTTTTTTTTTCTAGCTGCATGAGGTAGTTTTGTTTGAAAGAATAGTCAATGCAGACTGCAGTTTTCCGAATGAGGCTTGCTCTTGGCAA
Seq C2 exon
GTTTTCCAGCATTGTGGGCCATCCAGATGATGCGGAATGGAGGTTCCAGAACCCACCTGCCCTGCCCCTCCTGCGAGGGACCAGCCAGCTCCCACTCCTGGCCCTCCAGGGGCCCCAGGTGGCCAGGCCTCACCTCACCTGACCCTGGGCCCTGTCCTTCTGCCGCCAGAGCAGGGCCTGGCCCCCCCCACTGTGTTCCTGAAGGCCCTGCCCATCCCACTGTACCACACGGTGCCTCCCGGGGGCCTCCAGCCCCGCGCCCCGCTAGTGACGGGCAGCCTAGATGGGGGCAACGTGCCCTTCATACTCAGCCCTGTGCTGCAGCCTGAAGGGCCTGGCCCCACCCAGGTGGGGAAGCCGGCGGCCCCTACGCTGACGGTGAACATCGTGGGCACTCTGCCTGTCCTGTCGCCGGGCCTGGGCCCCACGCTGGGCAGCCCAGGCAAGGTGCGGAATGCGGGCAAGTACCTGTGTCCGCACTGTGGTCGCGACTGCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124203-'2-8,'2-5,12-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.851
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGTGGACTGAGCACTTA
R:
GCACAGGGCTGAGTATGAAGG
Band lengths:
343-1587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains