HsaEX7108753 @ hg38
Exon Skipping
Gene
ENSG00000132010 | ZNF20
Description
zinc finger protein 20 [Source:HGNC Symbol;Acc:HGNC:12992]
Coordinates
chr19:12131350-12135895:-
Coord C1 exon
chr19:12135769-12135895
Coord A exon
chr19:12135500-12135560
Coord C2 exon
chr19:12131350-12133985
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTCCGGGTCTGTGTTTTAGGAA
3' ss Score
11.22
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATTCAGTGGCCTTTGAGGATGTGGCTGTCAGCTTCACCCAGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGATGTGATGCAGGAAACCTTCAAGAACCTGACCTCTGTAG
Seq A exon
GAAAAACATGGAAAGTTCAGAACATTGAAGATGAGTACAAAAATCCCAGGAGAAATCTAAG
Seq C2 exon
TCTTATGAGAGAGAAACTCTGTGAAAGTAAAGAAAGTCATCACTGTGGAGAAAGCTTCAACCAGATTGCAGATGACATGCTGAACAGGAAAACTCTTCCTGGAATAACACCATGTGAAAGCAGTGTGTGTGGAGAAGTTGGCACGGGTCATTCATCTCTTAATACGCATATCAGAGCTGACACTGGACACAAGTCATCTGAGTATCAGGAATATGGAGAGAATCCATATAGAAATAAGGAATGTAAGAAAGCCTTCAGTTATCTTGACTCCTTTCAATCACATGATAAAGCTTGCACTAAAGAGAAACCCTATGATGGTAAAGAATGTACAGAAACCTTCATTTCCCATTCATGCATTCAAAGACACAGGGTAATGCACAGTGGAGATGGACCTTATAAATGTAAGTTTTGTGGGAAAGCCTTCTATTTTCTCAATTTATGTCTTATCCATGAACGAATTCACACTGGTGTGAAACCATATAAGTGTAAACAATGTGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132010-'7-8,'7-7,8-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.175 C2=0.053
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=89.1)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATGTGATGCAGGAAACC
R:
TCCTGTTCAGCATGTCATCTGC
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains