HsaEX1045501 @ hg38
Exon Skipping
Gene
ENSG00000214189 | ZNF788
Description
zinc finger family member 788 [Source:HGNC Symbol;Acc:HGNC:33112]
Coordinates
chr19:12092263-12135927:+
Coord C1 exon
chr19:12092263-12092470
Coord A exon
chr19:12111246-12111372
Coord C2 exon
chr19:12135775-12135927
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTTCATTTTTCACAGAGG
3' ss Score
8.67
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
AACTTTTTTCGGGGAAGGAGACGGCTGCAAGCCCGCGGTCTCTTGTTGCTGTGCTAACGACCGTTGGAACCCTCTTTCTGGCTCTTGGAACGCTCGGCTCTGAGAGGCTCCAGGTTTCTCCGCCAGAGCTCCTGTCGCTCTGTCAGTTGCGCTGTGTTCCTCTCTAGTCACAAGAGCCTTGGGGAAGACAGTTGGAAGCTCAGACATG
Seq A exon
AGGTCTTATGGAAGAGAGACTCTTTGAAAGTGAAGGTCATCAGCATGGAGAAATTTTGACCCAGGTTCTGGATGACATGCTGAAGAAGAAAACTGGAGTAGAATCATGTGAAAGGAATGTGTGTGAG
Seq C2 exon
AGGTCAGGTTCTTGAAGGTTTCCTGCATCACATCCCTGTAGAGATTCTTCTGGGAAGGATCCAGCAAAGCCCACTCCTCCTGGGTGAAGCTGACAGCCACATCCTCAAAGGCCACTGAATCCTGAAACATCTCACATATATAAAAGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214189_MULTIEX1-4/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.066 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=13.8)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTGGAACCCTCTTTCTGG
R:
GAGGATGTGGCTGTCAGCTTC
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains