HsaEX1045500 @ hg38
Exon Skipping
Gene
ENSG00000214189 | ZNF788
Description
zinc finger family member 788 [Source:HGNC Symbol;Acc:HGNC:33112]
Coordinates
chr19:12110305-12114851:+
Coord C1 exon
chr19:12110305-12110431
Coord A exon
chr19:12110634-12110694
Coord C2 exon
chr19:12111246-12114851
Length
61 bp
Sequences
Splice sites
3' ss Seq
TATCTGCGCCTGTATTTTAGGGA
3' ss Score
9.79
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GACTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCCAGACGAGTGGGCTTTGCTGGATCCTTCCCAAAAGAATCTCTACCGAGAAGTGATGCAAGAAACCTTGAGGAACTTGGCCTCTATAG
Seq A exon
GGAAGAAATGGAAAGACCAGAACATTGAAAATGAGTACAAAAATCCCAGGAGCAACCTAAG
Seq C2 exon
AGGTCTTATGGAAGAGAGACTCTTTGAAAGTGAAGGTCATCAGCATGGAGAAATTTTGACCCAGGTTCTGGATGACATGCTGAAGAAGAAAACTGGAGTAGAATCATGTGAAAGGAATGTGTGTGAGGTCAGCATGGGTCATTTATCCCTTAATAAGCACACCAGAGCTGACACTGGACACAAGCCATATGAGTATCAGGAATATGGACAGACGCCATATAAATGTACATACTGTAAGAAAGCCTTCAGCTGTCTCCCCTACTTTTGCAGACATGTAATTGCACACACTGGAGAAAAACCCTATGAATGTAAGGATTCTGCGAAGACATTTAGTTTTTCCATTTATTTTCATAGTCATAAAAGAGCTCACTCTGGAGGGAACCCCTATGAATGTAAACAATCTGGAAAACCCTTTGGATGCGCCTCAGAACTTCAAATGCATGCAAGGACTCAGTGTGGAGAAACCTTACAAATGTAAGAAATGTGAAAAAGCATTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214189_MULTIEX1-3/5=2-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.286 C2=0.071
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=13.8)
Main Inclusion Isoform:
ENST00000430298fB30954
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTTCACCCCAGACGAGT
R:
TCCATGCTGATGACCTTCACT
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains