HsaEX1045499 @ hg38
Exon Skipping
Gene
ENSG00000214189 | ZNF788
Description
zinc finger family member 788 [Source:HGNC Symbol;Acc:HGNC:33112]
Coordinates
chr19:12092263-12114851:+
Coord C1 exon
chr19:12092263-12092470
Coord A exon
chr19:12110305-12110431
Coord C2 exon
chr19:12111246-12114851
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACACATATGGGATGTTTTAGGAC
3' ss Score
5.66
5' ss Seq
TAGGTAACG
5' ss Score
7.74
Exon sequences
Seq C1 exon
AACTTTTTTCGGGGAAGGAGACGGCTGCAAGCCCGCGGTCTCTTGTTGCTGTGCTAACGACCGTTGGAACCCTCTTTCTGGCTCTTGGAACGCTCGGCTCTGAGAGGCTCCAGGTTTCTCCGCCAGAGCTCCTGTCGCTCTGTCAGTTGCGCTGTGTTCCTCTCTAGTCACAAGAGCCTTGGGGAAGACAGTTGGAAGCTCAGACATG
Seq A exon
GACTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCCAGACGAGTGGGCTTTGCTGGATCCTTCCCAAAAGAATCTCTACCGAGAAGTGATGCAAGAAACCTTGAGGAACTTGGCCTCTATAG
Seq C2 exon
AGGTCTTATGGAAGAGAGACTCTTTGAAAGTGAAGGTCATCAGCATGGAGAAATTTTGACCCAGGTTCTGGATGACATGCTGAAGAAGAAAACTGGAGTAGAATCATGTGAAAGGAATGTGTGTGAGGTCAGCATGGGTCATTTATCCCTTAATAAGCACACCAGAGCTGACACTGGACACAAGCCATATGAGTATCAGGAATATGGACAGACGCCATATAAATGTACATACTGTAAGAAAGCCTTCAGCTGTCTCCCCTACTTTTGCAGACATGTAATTGCACACACTGGAGAAAAACCCTATGAATGTAAGGATTCTGCGAAGACATTTAGTTTTTCCATTTATTTTCATAGTCATAAAAGAGCTCACTCTGGAGGGAACCCCTATGAATGTAAACAATCTGGAAAACCCTTTGGATGCGCCTCAGAACTTCAAATGCATGCAAGGACTCAGTGTGGAGAAACCTTACAAATGTAAGAAATGTGAAAAAGCATTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214189_MULTIEX1-2/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.047 C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF134651=zf-H2C2_2=WD(100=13.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGGCTCCAGGTTTCTCC
R:
CCATGCTGACCTCACACACAT
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains