MmuEX6010158 @ mm10
Exon Skipping
Gene
ENSMUSG00000068959 | Zfp619
Description
zinc finger protein 619 [Source:MGI Symbol;Acc:MGI:1917477]
Coordinates
chr7:39517766-39534175:+
Coord C1 exon
chr7:39517766-39517864
Coord A exon
chr7:39533793-39533919
Coord C2 exon
chr7:39534115-39534175
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTACATATGGGACATTTTAGGAC
3' ss Score
3.13
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CCCTTTAAGGCTGAGCGAGGTGCCACTTGAGCCGCGCTTGCGAGCTCCGCTGCCAGGACCTGTGGGGAGAGTGCAGTCGAGATCGGAAGCCGCGCCATG
Seq A exon
GACTTGGTGACCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAAGAGTGGACTTTGCTGGATCCTTCTCAGAAGAACCTATACATTAATGTGATGCTGGAGACCTGCAGTAACCTTGCTTCTGTGG
Seq C2 exon
GAATCAAATCAGAATACCAGACCATTGAAGACCAGTATAAACAGCCTGGGAAAAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068959-'1-4,'1-0,5-4=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTAAGGCTGAGCGAGGTG
R:
ATTTTTCCCAGGCTGTTTATACTGGT
Band lengths:
154-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types