HsaEX0074453 @ hg38
Exon Skipping
Gene
ENSG00000223547 | ZNF844
Description
zinc finger protein 844 [Source:HGNC Symbol;Acc:HGNC:25932]
Coordinates
chr19:12064699-12074421:+
Coord C1 exon
chr19:12064699-12064876
Coord A exon
chr19:12074031-12074157
Coord C2 exon
chr19:12074361-12074421
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATACATGTGGGATGTTTCAGGAC
3' ss Score
5.28
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTTTATCCGCGGGTCACATTGCCGTTCGCCTCAGTCTTTGGCCCCTCCCGCCGGGTGAGGTTGGCACCCCGTTTTTCCTGCTCTGAGAGGGACCGGTTGCCACCGCCATACTTCTGTCGCCCTGTCGTCTGTGTTGTGACTGCTTTGGACGTGGGAGTCACCTGAAAGCCAGGAAATG
Seq A exon
GACTTGGTGGCTTTCGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGTCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGAGAAGTGATGCAGGAAACCTTGAGGAATCTGGCCTCCATAG
Seq C2 exon
GAGAAAAATGGAAAGACCAGAACATTGAAGATCAGTACAAAAATCCCAGGAATAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000223547_MULTIEX1-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENST00000439326fB30978
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTATCCGCGGGTCACATTGC
R:
GATTATTCCTGGGATTTTTGTACTGA
Band lengths:
234-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development