HsaEX0074454 @ hg38
Exon Skipping
Gene
ENSG00000223547 | ZNF844
Description
zinc finger protein 844 [Source:HGNC Symbol;Acc:HGNC:25932]
Coordinates
chr19:12074031-12081565:+
Coord C1 exon
chr19:12074031-12074157
Coord A exon
chr19:12074361-12074421
Coord C2 exon
chr19:12075312-12081565
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTCTGATTCTGTATTTTAGGAG
3' ss Score
10.42
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GACTTGGTGGCTTTCGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGTCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGAGAAGTGATGCAGGAAACCTTGAGGAATCTGGCCTCCATAG
Seq A exon
GAGAAAAATGGAAAGACCAGAACATTGAAGATCAGTACAAAAATCCCAGGAATAATCTAAG
Seq C2 exon
AAGTCTTCTGGGAGAGAGAGTTGATGAAAATACAGAAGAAAATCATTGTGGAGAAACTTCTAGCCAGATTCCAGATGACACACTGAACAAAAAAACTTCTCCTGGAGTAAAATCATGTGAAAGCAGTGTGTGTGGAGAAGTCTTCGTGGGTCATTCTTCCCTTAATAGGCACATTAGAGCTGACACTGCACACAAGCCGTCTGAGTATCAGGAATATGGACAGGAGCCATATAAGTGTCAACAACGTAAGAAAGCCTTCAGATGTCACCCCTCCTTTCAAATGCAAGAAAAGGCTCACACTGGAGAAAAACTCTATGATTGTAAAGAATGTGGAAAAACCTTCATATCCCATTCAAGCATTCAAAGACACATGATAATGCACAATGGAGATGGAACTTATAAATGTAAGTTTTGTGGGAAAGCCTGCCCTTGTCTCAGCATATATCTTATACATGAACGAGTTCACACTGGAGAGAAACCATATAAATGTAAACAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000223547_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.023 A=0.810 C2=0.113
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGGCTTTCGAGGATGTG
R:
TCAACTCTCTCTCCCAGAAGACT
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development