MmuEX6010157 @ mm9
Exon Skipping
Gene
ENSMUSG00000068959 | Zfp619
Description
zinc finger protein 619 [Source:MGI Symbol;Acc:MGI:1917477]
Coordinates
chr7:46789163-46795790:+
Coord C1 exon
chr7:46789163-46789289
Coord A exon
chr7:46789485-46789545
Coord C2 exon
chr7:46790109-46795790
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTCTGGGTCTACATTTTAGGAA
3' ss Score
8.11
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACTTGGTGACCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAAGAGTGGACTTTGCTGGATCCTTCTCAGAAGAACCTATACATTAATGTGATGCTGGAGACCTGCAGTAACCTTGCTTCTGTGG
Seq A exon
GAATCAAATCAGAATACCAGACCATTGAAGACCAGTATAAACAGCCTGGGAAAAATATAAG
Seq C2 exon
GAACATCATAACCCGCTCCGGATACACTCCATACGCACTTGAGGACTGTGGGGAGAAGCCATATCACTCCAGTTCTCTCACAACAATTCACATATACGTGGGAATCCACACTGTGAGCGGAGCGTATGGATATGAAGTGTATTCAAAACCTGTGGGTGCTCCAAGTTCATGTGGCACTGGTGAGCAAATTCAGAGTGGAGAGCAGCCCCATGGATATACTATAAACAAAACAGCCTTTATTTGCCCCAGCTCATTTTGCAGCAGCGAAGTAACTGACACTGAAGAAAACCCTTCTGAATGTAAACCAGGTGGTACAACTCTGAGTCCTTTCAATTACCCGCCGTTTTGCAGTGGAACTCATAATGGAGGAAAGCATGTTGACTGTACACAGTGTGTAAAGGCTTTCAGATGTCACAGTTCCCTTCAGAGACAGGAAAGAATGTGTGCTGAGGAAAAACCCTATGAATGTAAACAGTGTGGTAAGTCATTCGTTTACCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068959-'3-3,'3-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF054957=zf-CHY=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.2),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.2),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.0),PF134651=zf-H2C2_2=WD(100=2.0),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.1),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF0009621=zf-C2H2=WD(100=2.1),PF0009621=zf-C2H2=WD(100=2.1),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.2),PF054957=zf-CHY=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.2),PF127602=Zn_Tnp_IS1595=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGAAGAGTGGACTTTGC
R:
TCTCCCCACAGTCCTCAAGTG
Band lengths:
146-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: