HsaEX1045498 @ hg38
Exon Skipping
Gene
ENSG00000214189 | ZNF788
Description
zinc finger family member 788 [Source:HGNC Symbol;Acc:HGNC:33112]
Coordinates
chr19:12092263-12110431:+
Coord C1 exon
chr19:12092263-12092470
Coord A exon
chr19:12093836-12093895
Coord C2 exon
chr19:12110305-12110431
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTTTTTAACAGAGA
3' ss Score
10.03
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
AACTTTTTTCGGGGAAGGAGACGGCTGCAAGCCCGCGGTCTCTTGTTGCTGTGCTAACGACCGTTGGAACCCTCTTTCTGGCTCTTGGAACGCTCGGCTCTGAGAGGCTCCAGGTTTCTCCGCCAGAGCTCCTGTCGCTCTGTCAGTTGCGCTGTGTTCCTCTCTAGTCACAAGAGCCTTGGGGAAGACAGTTGGAAGCTCAGACATG
Seq A exon
AGAAATATGATTCCACAGGACAATGAAAACCCACCCCAACAGGGTGAAGCAAATCAAAAT
Seq C2 exon
GACTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCCAGACGAGTGGGCTTTGCTGGATCCTTCCCAAAAGAATCTCTACCGAGAAGTGATGCAAGAAACCTTGAGGAACTTGGCCTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214189_MULTIEX1-1/5=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=1.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGGCTCCAGGTTTCTCC
R:
CCACATCCTCAAAGGCCACTG
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains