HsaEX7109041 @ hg38
Exon Skipping
Gene
ENSG00000204514 | ZNF814
Description
zinc finger protein 814 [Source:HGNC Symbol;Acc:HGNC:33258]
Coordinates
chr19:57848731-57857289:-
Coord C1 exon
chr19:57857017-57857289
Coord A exon
chr19:57852338-57852388
Coord C2 exon
chr19:57848731-57850561
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCCTCAACCCACAGTCT
3' ss Score
9.84
5' ss Seq
GTGGTAATA
5' ss Score
3.78
Exon sequences
Seq C1 exon
ATACTTGGCAAATGTAAATGGTTTCTGGTATGATTTGGATAAACCCCTGAAGTCATGCCCTCCCCCAGCATGGCACTCCTGAGGGACAGGCTCCCTTTGAGCCTATCGTGATGAGCCTGAATTGAACCACATCTTGTCAAACATGGAGGACTCTCCATCTCACACCCAGTACATAGGACCCGACGATGTAACTATGAAAGGAGAGATAGCAGAGATGAACAGCCAACACTAGCTCAGGACAACTAAGCACCTGACAGCCCACAGGAGAGTAAG
Seq A exon
TCTATGCAACAAGGTCCAGCCAGATGAAGCCTGTAGCCAGGTAGAACTGTG
Seq C2 exon
ATCCTGCACTGGATGGATCAGCGGACAACACACAGACCGGTAATCTGGGTCAATCAGTTCTGCCATCCCACCCAGAACAGAAAACAGCATGAAAAACTCACTTTAACCCCCTATGAATCCATCTCCAACCAGACTGATCAGCACTCCCCACTTCCCAAGCCCCTACCCGCCAAATTTTGAAAACTCTGATCCCAGAATGCTCAGGGAGACTGATTTGAATAATAAAACTCCTGTCTCCCGAACAGCAGGACGGCTCTGCGTGAATTACTATTTCTCCATCGCAATTCCCCAGTCTTCATAAATCGGCTCTGTCTAGGCAGCTGGCAACGTGAACCCACTGGACGGTTACAAGGAGAGGCCTCCTGTGAGCGCCTCAGTGTTCCTACGCCGGGTACCGGCTACAGACCCACGAGCAGGAGCCGCTCCCTCGCTGGTTTAGGACCTGGGTGACGATGGGGTGACCTGAGGGCACAGAAGGCACCACAATTACCTGAGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204514-'29-35,'29-33,31-35=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.071 C2=0.867
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCAGTACATAGGACCCG
R:
GTGTGTTGTCCGCTGATCCAT
Band lengths:
145-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains