HsaINT0187765 @ hg38
Intron Retention
Gene
ENSG00000198466 | ZNF587
Description
zinc finger protein 587 [Source:HGNC Symbol;Acc:HGNC:30955]
Coordinates
chr19:57849857-57856233:+
Coord C1 exon
chr19:57849857-57850071
Coord A exon
chr19:57850072-57856103
Coord C2 exon
chr19:57856104-57856233
Length
6032 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTCATCTGTCACTATCATAGCAG
3' ss Score
5.34
Exon sequences
Seq C1 exon
CTAGTAGCGGCTGTGTATCGGCGATGCGGGTGTTTCCCCAGTTTGTGGCCCCTGAGTGCTGGGTGGGACCGCGGTGACTGAACCTAGAAGGTGGAGAGGAATCGTCCTCGGTGCCCAGAGGCGGCTCTGCAGCCCCGTGACGGCGACCACTGCTCCCGGGCCGTGCTTCCCCAAGTAGTCCGATGGCAGCGGCTGTGCCGAGGCGCCCAACTCAG
Seq A exon
GTAATTGTGGTGCCTTCTGTGCCCTCAGGTCACCCCATCGTCACCCAGGTCCTAAACCAGCGAGGGAGCGGCTCCTGCTCGTGGGTCTGTAGCCGGTACCCGGCGTAGGAACACTGAGGCGCTCACAGGAGGCCTCTCCTTGTAACCGTCCAGTGGGTTCACGTTGCCAGCTGCCTAGACAGAGCCGATTTATGAAGACTGGGGAATTGCGATGGAGAAATAGTAATTCACGCAGAGCCGTCCTGCTGTTCGGGAGACAGGAGTTTTATTATTCAAATCAGTCTCCCTGAGCATTCTGGGATCAGAGTTTTCAAAATTTGGCGGGTAGGGGCTTGGGAAGTGGGGAGTGCTGATCAGTCTGGTTGGAGATGGATTCATAGGGGGTTAAAGTGAGTTTTTCATGCTGTTTTCTGTTCTGGGTGGGATGGCAGAACTGATTGACCCAGATTACCGGTCTGTGTGTTGTCCGCTGATCCATCCAGTGCAGGATCTGCAAAATGCCCCAAGCACTGATCTTAGATATTGGGGAAACCAGCCCCACACCACCCAGCAGATACCCCGAGTCCTGCGGAGACAAAGGAGTTAGAAAGAGACAGAATACGCATTTAAAAGGCGGGTCCAGGTGGCCAGAGCATTGGAGGCTTCCTGGCGGCCCAGAGCTCTTGGGCTCCACCCAGTTTATTGGTTTACAAGCTCTTTGTTCTTATGGCTGATTGGAGGGGGAGGAAGCGATCAGGAAAAGGATTAATCAGTAAAGGAGAACTCGTGAGTCATTCCATAAGATGTAAAGCACTGGCCGTTTCTGTGAATTTCCTTGAACAAAGGCGTGTGTCTAAACTACTTAAGATCTTTAACTTAACTGAAACGGGTGGCTGCGGGTTTCAGGAGGAGCCAAGATGTTTGATTATGCTCCACTGCTTCAAGGGAGTGTGATCTCCCTGAGCAACCCATGGAATGCTGCTGAAGAGTTATGCTCTCGGGGCATAAAGACATGAAGGCAATAAGGAGACTTTTCTCCTCAGAGGCCGCCCATGGCTTCCCATGGGTGTCTCACACAGGGGAGACCAACTCAACTAGCACCCCAGAAACTCACATTAGGTTTTACAATAGTAAGGTTATCTTCAGGAGCAACTTGGGGAGGTTCAGACTCTTGGAGCCAGAAGCTGCATGACCCCTAAACCGTAATTTCTATTCTTGTAGCTAATTTGTTAGTCCTGCAAAGACAGGCTGGTCCCCAGGCAAGAAAGGGGTCTTTTCAGGAAAGGGCTATTATCAATTTTGTTTCAGAGTGAAACCATGAACTGAATTCTTTTCCAAAGTTAATTCAGCCTATGCCCAGGAATGAAAAAAGACGGCTGAAAGGTTGGAAGCAAGATGGAGTCGGTTAGGTCTGATTTCTTTCACTGTCATAATTTCGTCAGTTATAATTTTGCAAAGTCGGTTTCACCTGTTTCTGACACCAGTGGGATGCAGTGGGGAGAGTGACAGGCACAGGTAGGGGTGCAGGCAATGGCCTGCAGATGGACAGAGCTGGAAGGATGGAACCTGGGGTTCACAGGCATCTGTCAGGAACAACGTGTGAGATGGAGCTCTTCCTGGTAGAGCAAGCAGGCCAGGGGCTGTGCATTCATCATGAGGATTCTAGAAGCCATGGAGAGTTTTGAAGAAAGGAGGGACATGATCCAAATCCAGGCTTTTAAGAAGTTTCCCAAAGGCCAATCAAAGGAAGAACATCATAGAGAGAGAGGATGAGGACTTTGGGGCCTTGGGAGGTTGAATCCGTTTTGTAGATCACATAGATGGTAGAGATGACATTTTGCACTGAGAAAAGCAGGTCAGACAACCAGCCTTAGGGTTACCTGGTTCCAGGGACAAGAAAGGGTTCAGGGAGTCCTGAGCTTATCAAATCCTGTGACATGTTTGTAATGTCTGCCTTTCCCCTCAGGCACTCCTGGCTGCAGAAGCACTTAGGGAACCCACACAGGGAAGTGGAGGGTGTTCCATTCCCTCATTGGTCCTGACGCCATCTACAGGTTCTCTAGCTTGTGGTGTCCTGGGACTCTTAAGTGCCATTTTTTTCAGTCCTTTGATCCGAGGACCCTGGAGAATCTCTGAAGCCAGGATACCAAGTCCATGACAGGTTATATGGAGGTATTCCCATTTCTGTCAACCAATGTAAACACCCTTGTAAGATTAACCCAGGATTTGCTACCAGGTTGTGAAATGCTTAGAGATAAAACGGATCAAAGTCAGGAGGTGATATTACCACAGTTCTACCTGGCTACAGGCTTCATCTGGCTGGACCTTGTTGCATAGACTGTGGGTTGAGGGAAGAGGAAGAAAGGTCAGAGATAAGGCTCCTGCCATAATCCAGGTGAGGGTTAATGGATCAGATAAGTGGTAAATCACATGGGTCTGGATTCAGGATTCACTTTTTGTAAAGAGACAGCTAGGTTTTCTTTTTTTTTTCTTAACGTGGAATTTCAGTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTTGGGCTCACTGGAGCCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCATTCAAGGTAGCTGGCATTACAGGCACCCACCATCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGAGGTTTTACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCGTCACATCTCGGCCTCCCAAAGTGCTGGGATTATAGGCATGGACCAATGCGCCCAGCCGAGACAGCTAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTCACTCTCTTGTCCAGCCTGGAGTCTAGTGGCACAATCTCAGCCCACTGCAACCTTCACCTCCTGGGCTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTACCACCACACTCGGCTAATTTTTCTATTTTTAGTAAAGTCGGGGTTTCACCATGTTGGCCAGGCTAGTCTCAAACTCCTGACCTCAGGAGATTCGCTGGCCTCTGCCTCCCCAAGTGCTGGGATTATAGGCACGAGCCACCATGCCTTGCAGACAGCTAGATTTTCTAATGTGGATGATAGGAGCATGAAAGAGGAATCGGGCATGAGCCCAAGGTTTTTGATCTTAGCAGCTGTAACCATGCACACTGCTTCAGCTGAGATGACGTTGGTATTGACATAATATTCACTGTGGATATCCAGAGGGTTGTTTTGGCCATATGAAGAATCAGAGACCAATAAGTGGTGGCATCAAATCGATAACTAGACATACTGGATGGGGTATCTGGGAGGGTGTTGATACTGGAGACATCCAATATATGAAAGCTAATGAGTGAACTATGATTAGTTATGGGTCCATTTAGGAGGACATGCTTCAGATTATGGTGGTAAATCTTTTCAGGGGGCAGAAAGGTGTGATTACAGGCTGAGGACTGGATCTCTTACTTACGTCCTCAATTGATGTTATTGGGCTTCCTAAACACCTGAGAGGGTGTGAGTGACCATCATAACAGGACATTTAATACAGTAGAGTTTGGAAGGGGACATAGACATCCAAAGAGATAATAGAGAAGAGATAGATGCATGCAGAAGCACAGGAGTAATTCAGGGAAGATGACACTTAGGCCTGAGTTGGTGCCAAAGTTGTAACTTTTTTGTTTTTTTTTTTTTTTCAGATGGAGTTTCGCTCTTGTTGCCCAAGCTGGAGTGCAATGGTGCCATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTAGTATTACAGGCACCTGCCACCACAGCAGGCTAATTTTTGTATTTTCGGTAGAGACAGGGTTTCACCATGCTGACCAGGCTAGTCTTGAACTCCTGACCGGGTGATCTGCCTGCCTCGGCCTCAAAGTGCTGGAATTGCAGGCGTGAGCCACTGTGCCTGGCCAGTTGTAACTATTTATCACTGTCTGGACTCATAAACATTTTGAGATGACTTTGGGAGTGCCTGGGGAGTTTCATTCAGCCTGGTGCATATGGGCAGTGAAAAATATGCTCATCTGTGATAGTAGATGTGGTTTGGTTCACAAATCCAGGGGCTGGGCTTTAAACGGCATTAGGTGGACAGAGGAGGGTTGCTACAGCTGAGGTCTCAGCTGGTGCAGCACAAAAGTGAAATAGGGCCATGGCTATCTGAAGCCATATGTGGTTCTGTGTGGCTATGGAGTCATTCCAGGAGACGTTCACAGGATGATTTGGGATTACCACTGCTATTGTAAACCATGGAAATTCTGTGTTAATATTGGATGCTATTTGTATTTGTCAAGCATAGTCTGGATGCTTATCCACATTTTGGTATAAGGCCAGAATTGAAGGCCCAATATGATGTGTCACTTTGACATCTTGTGAAAGTGGGACAACCTTAAAAGGTGTGAGTACAAATCTCATTCCCACTCTGCTCTCTTGAATAATGTATCCTAGCCTAACAGCCCGTTTTATCAAGGTGATAAGGCAGGGTTCCAGGTTGTTATATTTTGTGGTGGGTTTCAATTCCATCCCTACCAGCAGAGTTATGGAAACAAACCATTGCATATTCCCAAGGGAATCATGGGCCGTTATACCCTCTTCATCTTGTGAAATAATTTTATTTGTAGGCGCTGGGTGTGGTGGCTCACCCCTATAATCTCCTCACTTTCAGAGGCCAAGGCTGGTGGATCACTTGAGACCAGAAATTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAGGCCAGGCATGGTGGCTCAAGCCTGGAATCCCAGCACTTTGGGATGCTGAGGTGGGTGGATCAGGAAGTATGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAAAAAAAAAATACAAAAAATTAGCCAGCTGTGGTGGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCCTGAACCTGGGAGGCAGAGCTTGCACTGAGCTGAGATCATGCTACTGCCCTCCAGCCTGGGGGACACAGCAAGACTCCGTCTCAAAAAAAAAAAATTAGCCGAGTGTAGTGGTACATGGCTGTAATCCCAGCTACTTGGGAGGCTGAGGCACAAGAATCACTTGAACCTGGGAGGCGGAGGCTGCAGTGAGCCATGATTGTGTTCCTGCACTCCAGCCTGGGTGGCAGAGCTAGACTATGTCTCAAAAAAATCCCCCAAAAATAAACTTTTACTTCTGGGGATGCCAGAGAGGGGCTGAAGGTTGGGGAAACTCTGGTGGGGGTGGCCATGGGCATGTGTCTGTACAGTATAAAGAATGATATATATTTAATGAGAGCGAGGTTGTCTGATGGACTCAGGCAGCTGCCTTGGGCTTTACGTGACCTTGGATATCGCTGTTCAGAAGGGGGTGTGGGCTTTTTTTGTTTTTTTTTTTTTTGAGATGGTGTCTCGCTCTGTTGGCCAGGGTGGAGTGCAGTGGTGTGATCTCGGCTCACTACAAACCCCGCCTCCTGGGTTCACGCCATTCTCCGGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACCACCATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTAACCAGCATAGTCTCTATCCCCTGACTGCAAGATCTGCCCGAATCAGTGTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCCAGAAGGGAGTGGACCTTTTTATGTCAGGACCTCAGCATGGATACCTATTTGTCCACCTACTTCTTGTTGCTGATGGCATTTGACCAGCAGGCCCATGAAGAGACAAAGGCACCAGTGGATGTGGTTTCAACTCCGTGTTGGGGACCTTGGGAGGAGGATGGGCAAGGGTGGGTGTGTGGGAGAGGTGGGTTGTGGTACCTCAGCAGAGGGGCTGCTTGTGGTTTCATCTGTCACTATCATAG
Seq C2 exon
CAGGGCACTGTGACCTTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGTGTCTTCTTAGTGAGGCTCAGAGGTGCTTGTACCGTGATGTGATGCTAGAGAACCTGGCTCTCATATCCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198466:ENST00000339656:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains