HsaINT0187765 @ hg19
Intron Retention
Gene
ENSG00000198466 | ZNF587
Description
zinc finger protein 587 [Source:HGNC Symbol;Acc:30955]
Coordinates
chr19:58361269-58367601:+
Coord C1 exon
chr19:58361269-58361439
Coord A exon
chr19:58361440-58367471
Coord C2 exon
chr19:58367472-58367601
Length
6032 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTCATCTGTCACTATCATAGCAG
3' ss Score
5.34
Exon sequences
Seq C1 exon
GTGGCCCCTGAGTGCTGGGTGGGACCGCGGTGACTGAACCTAGAAGGTGGAGAGGAATCGTCCTCGGTGCCCAGAGGCGGCTCTGCAGCCCCGTGACGGCGACCACTGCTCCCGGGCCGTGCTTCCCCAAGTAGTCCGATGGCAGCGGCTGTGCCGAGGCGCCCAACTCAG
Seq A exon
GTAATTGTGGTGCCTTCTGTGCCCTCAGGTCACCCCATCGTCACCCAGGTCCTAAACCAGCGAGGGAGCGGCTCCTGCTCGTGGGTCTGTAGCCGGTACCCGGCGTAGGAACACTGAGGCGCTCACAGGAGGCCTCTCCTTGTAACCGTCCAGTGGGTTCACGTTGCCAGCTGCCTAGACAGAGCCGATTTATGAAGACTGGGGAATTGCGATGGAGAAATAGTAATTCACGCAGAGCCGTCCTGCTGTTCGGGAGACAGGAGTTTTATTATTCAAATCAGTCTCCCTGAGCATTCTGGGATCAGAGTTTTCAAAATTTGGCGGGTAGGGGCTTGGGAAGTGGGGAGTGCTGATCAGTCTGGTTGGAGATGGATTCATAGGGGGTTAAAGTGAGTTTTTCATGCTGTTTTCTGTTCTGGGTGGGATGGCAGAACTGATTGACCCAGATTACCGGTCTGTGTGTTGTCCGCTGATCCATCCAGTGCAGGATCTGCAAAATGCCCCAAGCACTGATCTTAGATATTGGGGAAACCAGCCCCACACCACCCAGCAGATACCCCGAGTCCTGCGGAGACAAAGGAGTTAGAAAGAGACAGAATACGCATTTAAAAGGCGGGTCCAGGTGGCCAGAGCATTGGAGGCTTCCTGGCGGCCCAGAGCTCTTGGGCTCCACCCAGTTTATTGGTTTACAAGCTCTTTGTTCTTATGGCTGATTGGAGGGGGAGGAAGCGATCAGGAAAAGGATTAATCAGTAAAGGAGAACTCGTGAGTCATTCCATAAGATGTAAAGCACTGGCCGTTTCTGTGAATTTCCTTGAACAAAGGCGTGTGTCTAAACTACTTAAGATCTTTAACTTAACTGAAACGGGTGGCTGCGGGTTTCAGGAGGAGCCAAGATGTTTGATTATGCTCCACTGCTTCAAGGGAGTGTGATCTCCCTGAGCAACCCATGGAATGCTGCTGAAGAGTTATGCTCTCGGGGCATAAAGACATGAAGGCAATAAGGAGACTTTTCTCCTCAGAGGCCGCCCATGGCTTCCCATGGGTGTCTCACACAGGGGAGACCAACTCAACTAGCACCCCAGAAACTCACATTAGGTTTTACAATAGTAAGGTTATCTTCAGGAGCAACTTGGGGAGGTTCAGACTCTTGGAGCCAGAAGCTGCATGACCCCTAAACCGTAATTTCTATTCTTGTAGCTAATTTGTTAGTCCTGCAAAGACAGGCTGGTCCCCAGGCAAGAAAGGGGTCTTTTCAGGAAAGGGCTATTATCAATTTTGTTTCAGAGTGAAACCATGAACTGAATTCTTTTCCAAAGTTAATTCAGCCTATGCCCAGGAATGAAAAAAGACGGCTGAAAGGTTGGAAGCAAGATGGAGTCGGTTAGGTCTGATTTCTTTCACTGTCATAATTTCGTCAGTTATAATTTTGCAAAGTCGGTTTCACCTGTTTCTGACACCAGTGGGATGCAGTGGGGAGAGTGACAGGCACAGGTAGGGGTGCAGGCAATGGCCTGCAGATGGACAGAGCTGGAAGGATGGAACCTGGGGTTCACAGGCATCTGTCAGGAACAACGTGTGAGATGGAGCTCTTCCTGGTAGAGCAAGCAGGCCAGGGGCTGTGCATTCATCATGAGGATTCTAGAAGCCATGGAGAGTTTTGAAGAAAGGAGGGACATGATCCAAATCCAGGCTTTTAAGAAGTTTCCCAAAGGCCAATCAAAGGAAGAACATCATAGAGAGAGAGGATGAGGACTTTGGGGCCTTGGGAGGTTGAATCCGTTTTGTAGATCACATAGATGGTAGAGATGACATTTTGCACTGAGAAAAGCAGGTCAGACAACCAGCCTTAGGGTTACCTGGTTCCAGGGACAAGAAAGGGTTCAGGGAGTCCTGAGCTTATCAAATCCTGTGACATGTTTGTAATGTCTGCCTTTCCCCTCAGGCACTCCTGGCTGCAGAAGCACTTAGGGAACCCACACAGGGAAGTGGAGGGTGTTCCATTCCCTCATTGGTCCTGACGCCATCTACAGGTTCTCTAGCTTGTGGTGTCCTGGGACTCTTAAGTGCCATTTTTTTCAGTCCTTTGATCCGAGGACCCTGGAGAATCTCTGAAGCCAGGATACCAAGTCCATGACAGGTTATATGGAGGTATTCCCATTTCTGTCAACCAATGTAAACACCCTTGTAAGATTAACCCAGGATTTGCTACCAGGTTGTGAAATGCTTAGAGATAAAACGGATCAAAGTCAGGAGGTGATATTACCACAGTTCTACCTGGCTACAGGCTTCATCTGGCTGGACCTTGTTGCATAGACTGTGGGTTGAGGGAAGAGGAAGAAAGGTCAGAGATAAGGCTCCTGCCATAATCCAGGTGAGGGTTAATGGATCAGATAAGTGGTAAATCACATGGGTCTGGATTCAGGATTCACTTTTTGTAAAGAGACAGCTAGGTTTTCTTTTTTTTTTCTTAACGTGGAATTTCAGTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTTGGGCTCACTGGAGCCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCATTCAAGGTAGCTGGCATTACAGGCACCCACCATCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGAGGTTTTACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCGTCACATCTCGGCCTCCCAAAGTGCTGGGATTATAGGCATGGACCAATGCGCCCAGCCGAGACAGCTAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTCACTCTCTTGTCCAGCCTGGAGTCTAGTGGCACAATCTCAGCCCACTGCAACCTTCACCTCCTGGGCTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTACCACCACACTCGGCTAATTTTTCTATTTTTAGTAAAGTCGGGGTTTCACCATGTTGGCCAGGCTAGTCTCAAACTCCTGACCTCAGGAGATTCGCTGGCCTCTGCCTCCCCAAGTGCTGGGATTATAGGCACGAGCCACCATGCCTTGCAGACAGCTAGATTTTCTAATGTGGATGATAGGAGCATGAAAGAGGAATCGGGCATGAGCCCAAGGTTTTTGATCTTAGCAGCTGTAACCATGCACACTGCTTCAGCTGAGATGACGTTGGTATTGACATAATATTCACTGTGGATATCCAGAGGGTTGTTTTGGCCATATGAAGAATCAGAGACCAATAAGTGGTGGCATCAAATCGATAACTAGACATACTGGATGGGGTATCTGGGAGGGTGTTGATACTGGAGACATCCAATATATGAAAGCTAATGAGTGAACTATGATTAGTTATGGGTCCATTTAGGAGGACATGCTTCAGATTATGGTGGTAAATCTTTTCAGGGGGCAGAAAGGTGTGATTACAGGCTGAGGACTGGATCTCTTACTTACGTCCTCAATTGATGTTATTGGGCTTCCTAAACACCTGAGAGGGTGTGAGTGACCATCATAACAGGACATTTAATACAGTAGAGTTTGGAAGGGGACATAGACATCCAAAGAGATAATAGAGAAGAGATAGATGCATGCAGAAGCACAGGAGTAATTCAGGGAAGATGACACTTAGGCCTGAGTTGGTGCCAAAGTTGTAACTTTTTTGTTTTTTTTTTTTTTTCAGATGGAGTTTCGCTCTTGTTGCCCAAGCTGGAGTGCAATGGTGCCATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTAGTATTACAGGCACCTGCCACCACAGCAGGCTAATTTTTGTATTTTCGGTAGAGACAGGGTTTCACCATGCTGACCAGGCTAGTCTTGAACTCCTGACCGGGTGATCTGCCTGCCTCGGCCTCAAAGTGCTGGAATTGCAGGCGTGAGCCACTGTGCCTGGCCAGTTGTAACTATTTATCACTGTCTGGACTCATAAACATTTTGAGATGACTTTGGGAGTGCCTGGGGAGTTTCATTCAGCCTGGTGCATATGGGCAGTGAAAAATATGCTCATCTGTGATAGTAGATGTGGTTTGGTTCACAAATCCAGGGGCTGGGCTTTAAACGGCATTAGGTGGACAGAGGAGGGTTGCTACAGCTGAGGTCTCAGCTGGTGCAGCACAAAAGTGAAATAGGGCCATGGCTATCTGAAGCCATATGTGGTTCTGTGTGGCTATGGAGTCATTCCAGGAGACGTTCACAGGATGATTTGGGATTACCACTGCTATTGTAAACCATGGAAATTCTGTGTTAATATTGGATGCTATTTGTATTTGTCAAGCATAGTCTGGATGCTTATCCACATTTTGGTATAAGGCCAGAATTGAAGGCCCAATATGATGTGTCACTTTGACATCTTGTGAAAGTGGGACAACCTTAAAAGGTGTGAGTACAAATCTCATTCCCACTCTGCTCTCTTGAATAATGTATCCTAGCCTAACAGCCCGTTTTATCAAGGTGATAAGGCAGGGTTCCAGGTTGTTATATTTTGTGGTGGGTTTCAATTCCATCCCTACCAGCAGAGTTATGGAAACAAACCATTGCATATTCCCAAGGGAATCATGGGCCGTTATACCCTCTTCATCTTGTGAAATAATTTTATTTGTAGGCGCTGGGTGTGGTGGCTCACCCCTATAATCTCCTCACTTTCAGAGGCCAAGGCTGGTGGATCACTTGAGACCAGAAATTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAGGCCAGGCATGGTGGCTCAAGCCTGGAATCCCAGCACTTTGGGATGCTGAGGTGGGTGGATCAGGAAGTATGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAAAAAAAAAATACAAAAAATTAGCCAGCTGTGGTGGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCCTGAACCTGGGAGGCAGAGCTTGCACTGAGCTGAGATCATGCTACTGCCCTCCAGCCTGGGGGACACAGCAAGACTCCGTCTCAAAAAAAAAAAATTAGCCGAGTGTAGTGGTACATGGCTGTAATCCCAGCTACTTGGGAGGCTGAGGCACAAGAATCACTTGAACCTGGGAGGCGGAGGCTGCAGTGAGCCATGATTGTGTTCCTGCACTCCAGCCTGGGTGGCAGAGCTAGACTATGTCTCAAAAAAATCCCCCAAAAATAAACTTTTACTTCTGGGGATGCCAGAGAGGGGCTGAAGGTTGGGGAAACTCTGGTGGGGGTGGCCATGGGCATGTGTCTGTACAGTATAAAGAATGATATATATTTAATGAGAGCGAGGTTGTCTGATGGACTCAGGCAGCTGCCTTGGGCTTTACGTGACCTTGGATATCGCTGTTCAGAAGGGGGTGTGGGCTTTTTTTGTTTTTTTTTTTTTTGAGATGGTGTCTCGCTCTGTTGGCCAGGGTGGAGTGCAGTGGTGTGATCTCGGCTCACTACAAACCCCGCCTCCTGGGTTCACGCCATTCTCCGGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACCACCATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTAACCAGCATAGTCTCTATCCCCTGACTGCAAGATCTGCCCGAATCAGTGTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCCAGAAGGGAGTGGACCTTTTTATGTCAGGACCTCAGCATGGATACCTATTTGTCCACCTACTTCTTGTTGCTGATGGCATTTGACCAGCAGGCCCATGAAGAGACAAAGGCACCAGTGGATGTGGTTTCAACTCCGTGTTGGGGACCTTGGGAGGAGGATGGGCAAGGGTGGGTGTGTGGGAGAGGTGGGTTGTGGTACCTCAGCAGAGGGGCTGCTTGTGGTTTCATCTGTCACTATCATAG
Seq C2 exon
CAGGGCACTGTGACCTTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGTGTCTTCTTAGTGAGGCTCAGAGGTGCTTGTACCGTGATGTGATGCTAGAGAACCTGGCTCTCATATCCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198466-ZNF587:NM_032828:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)