MmuINT0179446 @ mm9
Intron Retention
Gene
ENSMUSG00000034071 | Zfp551
Description
zinc fingr protein 551 [Source:MGI Symbol;Acc:MGI:3588205]
Coordinates
chr7:13003892-13007195:-
Coord C1 exon
chr7:13007157-13007195
Coord A exon
chr7:13004016-13007156
Coord C2 exon
chr7:13003892-13004015
Length
3141 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AATTGTTTCCATTGTGATAGGAT
3' ss Score
6.67
Exon sequences
Seq C1 exon
GTTCCCCTGACTTCAGAACCAGTTATGGAGCTTGGCCTG
Seq A exon
GTAAGTGGATCCTGCCATTACCCTCATGCTACCAACAGGTTTTAGGTTAGTGGTGTCCTTGGTCTATTATCTCAGTGTGCCCTAGTAGCCTGGTGCCTTGCAGTCTTGAACAGGTTAGGTACATAACCCAGAGATGTGTAGGCTGTGAGTTGTATGAAATTCTTGGCAAGTGTGAACAGAAGTGTAGAAGGTTGCTTCTCCCACGGTGTGTGCCAGTATGTGCCTGTGCCTGAAGGGGAGACTGAATTACTTAGGCATGTGCAGAAAGATCTTTCTCCTTAGAATAAGGATCAGTGAGGTGAAGGTGTCAGACCCAGAATAATTCTCTGAAAAGCAGAATGTGTACTTTATATGTAGAAATGACAATGGGAAATTTGGGTGTGGAGAAGGCTGGCAAGCCAACTTATTCTCCTCAGGCTCCTTGTTGCCGGCTGCTGCACGGGAAACCGACTGTGGAAGAAGGGAAATGGTGTTGTGTAGACAGTAATTCTGTGGAGACATGAACAAGCATCTAGGAGTCCCAGATAGGGAAGAGAGGACAGACCAAAGTACAACTTGGTAAGCCAGTGAGCTTTACTGGGGTTACTTACAGGAGTATGAGTGAGGGAACATTAGATAGCCGTGTCAACAAAACCCACCCCAGCATGGATTGATGACTCTAGGAAACTGGAACCCTAGAGCACATGGTATAAACTTGGAGATAGTGTGACAGGTTTTAGTGTCTTTGCTAGGCATCACATCTGGTCTGATCACTTCGACTATCTCTGCTCTTTATACTGGGCTGAAAGGGGTCTAGTGCATCACAATGTAGCTCAAGCTAGCTTTGAACTTGTGACAGTCTCCTAAGTACTGGAATTATAGGCATGAGTTATAATACCCGGCTTCCACTGGTAATTGTTGGTGGGTGTCTTAGGGCTTTATCGCAGTGAAAAGACACCATGACTCTGGCAATTCTTAGAAAGGAAACATTTAATTGAGGTTGGCTTATAGTTTTAGAGGTTAGTCTGTTAACAGAAATATGTAATCTCAGTCAGTGGTTTTGCCCTCCCTTTGATCATTTGGTTCCTGGATAAATGATACACAACTTTTATTATTATAATAAGCCTTCATCAACACTAGAGCTGGGCAGATATCTACCCTCTATGCTATTAGAATCTATTTCTCCACCAATAACCCCAAGGCATAATTTGCCATGTTCCATCTGGGCAGCTCTTAACTCCAATTTGCTAGCCCTCATGGCTATATCATGATTTACCTAACCCATGGTGGCTTCCTCTTCTCTTCACCTTCTATCTGTTTGTGCTTTTGCTCAGACCTCAACCTTGAGAACCTCAAACCTGACCTGTGTCTCTTCTGCCCAGTTGGCTGTCAGTATCTTTATTTAATCAAGGACCAAGGTCATGCTGTACACATGTGTGGAATCTCTGTGGGCAACCAGGCTTTGGGGGTCAGTGTCTAGCATTACAATACATAGTAAATGACCAAACCTCAACATTAGTTCATTATTGTCCTGACAGGAAGCATGGCAGTGTGCATGTAGACATGGTGTTGGAGGAGCGAAGAGGTCTACATCTTGGTCTGCAGGCAGCAAAAGGAGACTGTGTCACTGGACATAGCTTGAGCAACTGAGACCTCAAAGCCCACCTCCATGATGATATACTTCCTCTAACAAGGTTACACCTCCTCCAACAAGGCCACACCTCCTAATAGTGCCACTCCCTCTAGGCCAAGTATTCAAATTCATGAGTCTACAGGGGCCAAATCTATTCAAAACACCACAGTGGGTGAGGTTGAACCAAAGAATAGCATCAGGTAGGATACCATCATTACAGGGTTGGGGCTGCTTTGTAGTGGGGTCTGTGAGAGGTTGGGGAATTCCTCAAGGACTCTGTGGATCCTATGTGTTGAGTAACCAATGGGTAGGCCAAGGGGCTGCTTCCAGTGTGTAGCTATGGTTGTATGTATAGAGAGGTGTGTGGAACAAAAAGGTGGAAGTGCAAATTGATGATCTCAAGGTCTTGACATAGTAATGAAAGTTGCAAATCCTTGTTTGGTTGTATATGGAATGAGGGATGGGCAGGACTACTGGGCAGTTCTATGGTAGTAAAGCATGCAGCTCTACATGCCAGGGCCAGAATTAGATGTTGCCTATCATCCTTCTATGTGTTAGTGATGGGCATGAGTAGTCAGTGAGATTGAGAACCTGGTGTAAGTAGTACTCAGGCCTATATCTCATCATGGGCAGATAAGATTAGATGGGAGATGTGCATTACATTGGAGTCTTCAGAAGGAAATGGATCATAAACTTCTTTTTTTCCTATGATTCAGGGCCATGTAATCCTGAGGGTGTAGCTGTGGGAATGAAATCATACAAGAAAAGTACGATTCAGAGAGCTGTGTTTGGGAGTAGGGAGATGGCTCAGTGGGCAAAGTGCTTGCTTTTCATGGATGAGGACCTGAGTTCAGATTTCCAGCATCCATATAAAGCATGGGCCCTGTGGACCATGTCTGTAACCTCAGCAGTGGGATTGAGGGTGGGGAGCAGAGACAGGAAGATCCCTGGACGTCACTGGCTAGCCAGTCTGGTTAAACTGCTGAGTTCCAGTTTTATTGAGAAGGCGTATCTCACCAAATATGACAGCAAACATTTGAACATGACATCCAACATTGACCTCTTAGATGCACAAATGTGCAGAGGTAGCGTGAACTAATTTCCCCAGAAGTAGTAAAGAGTCTTAGGATAAAGAGGTGAGCCCATGTTCCTTGGGTCTGGAAGATTTTTAGGGTCTTCAGGGCTATTGTCTGATAAGACAAAATTTAAGTTAGCCTATCTTCTCTCTAACCATTTTTCTCCCTAACCAGTCTCTGTGACAGCCACGGCATTGATAAGAGGGCATAGTAGCCTTCATCCTAGGCCTTGAGTTTAGATTTTATCTTTCTGTTTATCTCCCTGTGTTTCCATGGAAGGGTACAATATCAGCAGGCAGAGAGTGGGCAATCAGTAGATGAGCGTCTCCTTTGATATGACATGGAGAATATAGAGAGCAAGAGATGTATATTGGGACAACAAAAGTGGAGTGCTTTGAGTTGGAGTCCAGAAAGAGAAGCCGGTTATAAGCTAAATTGTTTCCATTGTGATAG
Seq C2 exon
GATGTGTCCTTTGAGGATGTGGCCATTCACTTCTCCCAGGAAGAGTGGGTGCTCCTTGATAAGGCCCAGAGACTCCTGTACTGCAGTGTGATGCTGGAAAACTTGGCACTTGTGGCATCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034071-Zfp551:NM_001033820:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: