HsaINT0186264 @ hg19
Intron Retention
Gene
ENSG00000179909 | ZNF154
Description
zinc finger protein 154 [Source:HGNC Symbol;Acc:12939]
Coordinates
chr19:58216221-58220579:-
Coord C1 exon
chr19:58220307-58220579
Coord A exon
chr19:58216348-58220306
Coord C2 exon
chr19:58216221-58216347
Length
3959 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATCTGTTCCCATTGTGGCAGGGC
3' ss Score
6.71
Exon sequences
Seq C1 exon
CCTCTTCGTGGCGGCCATTTTAGCTTCTCTGAGGTGTGTTCACCGGATCAGAGATAGCAGAGCGCCGAGTTGGGGCCACGAAGGCGTGAGGGGAGTCGTCGTCCCTCCTGCACGAAAGCGTCTAAGCCTTGGCGACGCCGCCCTGGGGGACCCACGTCAGGCCTGGGATAGGGACCGCTGTCCCCGGGTCCCTACCAATGTCGCCCGTCGCTCCCGGCCCAGCTCTACCCGCAGAGTCTGATGGCAGCGGCCACTCTGAGGACGCCAACTCAG
Seq A exon
GTGAGTGCGGCGTCTTCCCGTCCTCACACACCTTCCCCCACCCACGTTCTAAAGCCATCAGTGAGGGGCGCCTGCTCGAGTCCCCGCTGCCCAGGGTCGGGGACACTGAGGCGTTCGTGGGTGGGGCCCTTTTTTTGACACTGCGTGTGACGAGGTGTGGGAGAGCGTGACAGGCGGAGGAACCGGCGCGTGCAAAGGTTGAGGCGCGACTGAGCCAGGAGAATTCGGAAAGCTGTTTTCTGCAGGGAACGAAGAATATGAGGCGGAGTTACTCCTAGGGTTGTACTGTCATTGTGAGGATGCTAGAAGCCACGGAGAGTTCTGAACAAAGGAGGGACGCCATTTATGTTAGTTTTTTTTTCTTTGAGACGGAGTTTCGCTCTTATCGCCCAGGCTGGAGTGCAATGACGCGATCTCGGGTCACTGCAACCTCCGACTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCCAGCAGCTGGGATTACAAGCCTGCAGCTGGGATTACAACGTCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGATTTCACCATTTTGGCCAGACTGGTCTGGAACTCCTGACAAGTGATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGCCCTATGTTAGGGTTTAAAAACTTTTCCAAAGACTGTTCACAGGAAGAGCAGCGATGGGGCGATGAGGACATTGAGATAGTGGGAGGCTACATCTTTTTTTCATTGCCCTACAGTTGGCAAGAGGTGACAGCACTGAGACCAGAAAGTAAAACAGCCAGCCTGAGTTCAGGGCCAGGCAGGGCTACAGGGAGGCTTGAGCTCATCTAGCCTCACCAGGGATGCATTCCTCTTTCCCTGGTTCTCCCAGTTGTAGAAGGGCGTATGGAACTCACATAGGGAAGTGGAGAGTGTTCGGTCCCTCAGTAGCCTCTACCCCCATGTTCTTGGGATTGTGGTTTCCTAGTATTCTTAAGTGCTGTTACCCCAATCCTGGGTCTGGTGCCCTGGAGAAATTCCAAGCCCAGGGCTCTTAAGTCCATGCCAGAGGTTACAGGGGTTATACTGAGGTGTTCCCATTTTTGTCAGCCAGTGGAAACTTGTGAAAGGTTATCTCTGGCACTGGTATCAGGAGGCGCAAGTGCTTAGTAAAACTAAGCTGAGATTTTTGAGGAAACCATAGATCTGTTTCCTTTTAGCTGGGAACAAAGAGCAGGGGGAAGGAGTCAGGACTGCAGTGGCTGCCTGAGAAGTTGGGTACCTATTCTGGAGGTAATGAGAGATTTGGGTTACAAGAGGGAGGTGATCTTACCAAAGTCCTAACAGGGTCCATCCCGTTAGCGTGGAGAGCAGACTGTGGGGTTGAGGGAAGAGGAAAGAAGATCAGAGTGGAAGCTACAGCCAGTCCAGGGTAATGGACCAGAGTCATTGATTAGGAGATGTGTTGCATTCTGGATGCAAATTTTTAAAGGGAGCAACTAAATTTTCTGATGTAGACAGCGAGGGAGTGAAACAGGATTCAGCGATGACCCCATGGTTCTTCAACTGAGATGGAGAAGTTGGTATTAACAGTAATATTCACTGGAGACAACAGGAGCTTTATTTGGTCATGTAAGAGTTTGAGATGTTTCAGAGACATTAAGTAGGCATTAAGTAGGTGGCTGAACACCCAGGTCTGGAAATCTGGGGAGTGCTTCAGAATGGAGACATCCAAAATGTGGTGGTCATTGTGTGGACTAAGGTGAGTGAGCTGTGGATTACATTTAGAAGGGTTGTTCTATTTTTTTTTTTTTTTTTTGAGATGGAGTGTCTCTCTTGTTGCCCAGGCCAGAGTGCAATGGCGCGAGCTTGGCTCACCACAACCTCCGCCTCCCGGCTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCGCCACCACGCCCGGCTAATTTTGTATTTATTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTAGTCTTGAACTCCCAACCTCAGGTGATCCACCCGCCTCAGCCACCCAGAGTTCTGGGATTACAGGCGTAAGCCACCGCATCCGGCCTACAAGGGTTAATCTTTAGGCATGGTGGTACAGGTTATTTGGCCAGGAAGGGCAGAATGGGGGCTAAGGACCAAGCCTTTTGGTTGGATAAGTGGGTGATATTCTTGGGCTTTCTAAACAGAGGTAAGGGAGGTTAGTGGCTATGGAGGTAGGGTGTTTGGAGAGGATAGTTGGGCAGGTGGCATACACTTTCAAGGGAAGAGTGGATATAAGGTGGATGCAGAGGCATAGGTGTATTTGAGGCAAATGGCTGTCCTTTTTTTCCTTTGTGCTTATTCAGCACTCTGTGGAATCACCAGGATTTTTTGATGACTTTGATGGGGCCTAGGGTGTTTATTCAACCTGGAGGATAAGGCCAGGTGCCAATGTGGTCATCTGTGACAGTCACTTGGCCTGGGGTAGGTGATCAGTGGAGCTAGTCTTTGAGTGTTAAGTGGACAGAGGAAGGTTGTTACTGCTGAGGGGCTAGCAAGTGCAGCACGGAAGTGGAATAGGGCCATGGGTATCTGAGATGCACATGTGGTTCTGTGTGGCCTAAATCTGAGGCAAAGAATGGAGCCAGCCAGGGAGCCCTCATAGGATTTGGGGCTGCTACCACTAGTGGATGCCCTGGGAGATCTAGGGTAGTATTAGATCCGTTTGAATCTGTCGAGCATACTCTGGACGCTGTGTGCTAAGTTATGGTGTAAAGTCTAAAATTAAGGCCCAGTATGACATCTGGTGAAATCAGGGTGGCATCAAATGGCCTGAGTACAAGTTTCCCTCCCTACTCTTCTCCCAAACAGACAACCCTTTTAATCAAGGAGACCAGGCACAATTTCTGCCTATCACTTTGTAGCAGATTTCAGCTCCCTACCAGGTCATGGAGTTTTCCAAACAAGCCCATTGTGGGAACCAGGGGGCAGTTGATCCTTTTGTTCTCAAAGTGCTTGCATCCCACAGTTTTTGGTTATTCACTTTTTTTCTGGACTAGACCCCCATGTGACCCTGTGTGGTACATGTTGTCCTCATCTCCCAGGTTCTATGTACATATGATTAATAAACTGCTATATCATCTTTCTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGACTGGAGTGCAGTTTCGCAATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCTTCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATATTGGTCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCCGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATACCCAACTGCTGTATCGTCTTTCTAGTGTCAGGTATTGTGTGTTTGTCCATATCCATAACCCTAGTGTGGCAATCCTGCCTTCGCTAATGGGGTAAAGAGGAAGAGATTAAAACAGTGACATGGGAGGTAAGAGCAGGGAGATGCCTATGGTGTGGGCAGTGAGGTGGCAGCCCTGGGCTTGGGGCTGTGGTGTCTGGAGATAGGAGGGATGTGTATTCTGAAGAATGATGTGCATCTGGAAAGGGAGTAAGTGACAGCTGCAGGGCCCTGGTATTGAGACTTAGATGACCTTGGACATTTCAGGGGGATTTCATGATGGGATAGTATGGATCCTTCCATGCCAGGCCCCCAGCTTAGATGCCTATTTATCCATGTGCTGGTTTCTCCTCTCAGTTGGGGAGCTTGGGAAGAGAATGGGCATGGGGTAAAGATGTGGGGGTATGCATTGTGGGTCCTTGGGATAGGGGCTCTTGGTGGTTTCATCTGTTCCCATTGTGGCAG
Seq C2 exon
GGCACTGTGACCTTTGAAGATGTGGCCGTACACTTCTCCTGGGAGGAATGGGGTCTCCTTGATGAGGCTCAAAGATGCCTGTACCGTGATGTGATGCTGGAGAACTTGGCTCTTTTAACCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179909-ZNF154:NM_001085384:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)