HsaINT0000083 @ hg38
Intron Retention
Gene
ENSG00000166535 | A2ML1
Description
alpha-2-macroglobulin like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr12:8868537-8869203:+
Coord C1 exon
chr12:8868537-8868627
Coord A exon
chr12:8868628-8869134
Coord C2 exon
chr12:8869135-8869203
Length
507 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
TTTCTCCCTCTCTTATTCAGCTT
3' ss Score
9.97
Exon sequences
Seq C1 exon
TTATGTGGGGAGCCGTAGCTCTTCCAATATGGCTATTGTGGAAGTGAAGATGCTATCTGGGTTCAGTCCCATGGAGGGCACCAATCAGTTA
Seq A exon
GTAAGTTACTTCTGTTTTCTTCATTTATCTAGCTGTGAGGGGACCTAACGTTATAATTTAAAAAACTGGTAAAATGGGCATCATGGCGTGTATACACACACACACACAAGGCATGTATATACATACATATATATGTATGTATATGTATGTACACTTGTAAGAAAAGTAGTTTTCATATATATATATGGCATCCATATACACAGTATGTGATTATATATATGTGTGTGTATACATATGTAGGTATATATACATGTATATATGTGCATGTATGTACATATATGTGTGCATATATGTATATATTCATACACACAAACTCATGATTGGATTATTTAAATGGGCTGCAAGGTTGTAGCAGATATATGACATGCAACTTGTAATAGTCTTGGTTCCCTTTTCCTACCTTTTCCACAGTATATATTGTTTCCTTGATCATGGCAGAGCTTTGGAAGACTACCCCAGGGAAGGCTCTGGCTCTTAGTATCTTTTTTTTCTCCCTCTCTTATTCAG
Seq C2 exon
CTTCTCCAGCAACCCCTGGTGAAGAAGGTTGAATTTGGAACTGACACACTTAACATTTACTTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166535:ENST00000299698:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(25.0=71.0)
A:
NA
C2:
PF076779=A2M_recep=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development