DreINT0000087 @ danRer10
Intron Retention
Gene
ENSDARG00000041685 | A2ML1 (3 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21285447-21286714:-
Coord C1 exon
chr15:21286633-21286714
Coord A exon
chr15:21285531-21286632
Coord C2 exon
chr15:21285447-21285530
Length
1102 bp
Sequences
Splice sites
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
3' ss Seq
TTTTTTTTTACAAAACACAGCTT
3' ss Score
2.58
Exon sequences
Seq C1 exon
ATATGATGGTCCACAGGCCAAAACTAACATGGTTATTGTGGACATTAAACTCTTATCAGGATTCACAGCTGATACGTCAATG
Seq A exon
GTGTGTTTGACTGTTAAGGGATTTATTCGATGTATTGATTTACTGTGAACCGAGGCGTAGCGCAAAAAGGCAGAGGATGGTGGTGGGGGTGTGTCATGGTTCGGGAAGGATGAGGGAGCAAGGACTTAAATGCAACATAAGATGGCTTTTATTTATTAAAAACAAAACAAAAAGTCAACAAAAACCACCCTGATGGGGACCAACATAACTATAACACAAAAGGGTAAACAAACTTGGCTGGGCTGGCAAGACAGGACTGGAGCAGGAACACAGGGGAGTGTAGAAAACAAACAGGCACAGGACAGCAGACATGAGGAGACTTTAAGCAGAAGTAAATGAACACACAAACAGATGAACATAATTAACTAATGATGGGTTAACAAGGAGGCTGGGACTAGACAATAGACAGGAGAGCACATGACACAAAGAGCCAACACAAGCCATGTGCTCACATAAAACAACGAGAACATGCAGCCAATTAGATTACTCATTAACCGCATGTTCATGTGACAACACAAGCACGTGCATGTAAACATGCTCCACATGCTAAACACAGCAACAGAAGACTGAACGTGGGACATGAGTACACGATGAATGAAAACACTCACCATGTACTCACACAAGCAGCGTGCATGCTTCACCCCTGCGCCGACCAAAACCGAAACCAACGAGACTGAGACGCTGGGAATGAAACGTCACTGCAGACAGACGAATGGGAACACCCGGACGAGATCGTGAAATCGCAAACACGTCCAGACCTCACGCGCCCGCATCAAGCAAATACGTGCACGGTCTAGGCGCGCTCACAAATATCGCTTATAGAGAAACACTCACAATGACAAAAGCGGTGCCCGACCTGAAAAAACTCAAGTCGAGCACAACACAAGACATGACAGGACTAGTGTCTGGACTCTGCCACTAAAACAAGAATTAACAAGACCACAATGGCAGCACCCTGACAGGGGGGGCTGTTGCGACAACCTTGATCACGCAGGGCCCCCATCCGCTACGCCACAGACTGTGACAATCTTTTGTTGGGAATGTAACATAATAAATGTATTTATTAATCTTTTGCTTTTTTTTTTTTTTTTACAAAACACAG
Seq C2 exon
CTTAAAACTCAACAGCAGTCATATGCCTCGCCTGTGGAGCGGATTGATTCCAAAGATGATCATGTCCTTGTGTATCTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041685:ENSDART00000155787:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF130431=DUF3903=PD(5.7=7.1),PF076779=A2M_recep=PU(20.9=67.9)
A:
NA
C2:
PF076779=A2M_recep=FE(29.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]