GgaINT0142538 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1600866-1601121:+
Coord C1 exon
chr27:1600866-1600956
Coord A exon
chr27:1600957-1601052
Coord C2 exon
chr27:1601053-1601121
Length
96 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTGCACTCCCTATTCCTCAGCTG
3' ss Score
5.5
Exon sequences
Seq C1 exon
GTACACTGGAAAGCGTGCTGCCACCAACATGGTTGTCATCGAGGCCAAGATGCCATCAGGCTACATCCCAGACAAGAGCTCGGTGGTAGAG
Seq A exon
GTGAGAGGTCCCTGCTGTCCCCCTGCACTCTGGGTCCCAGCATGGGGACAGAGGGACACCCACGTGGTGCTGAGCCCTGCACTCCCTATTCCTCAG
Seq C2 exon
CTGAAGAGGCAGAAACTGGTGAAGAAGGTGGAGGTGCAGAGCGACCAGGTGACCATTTACCTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(25.0=71.0)
A:
NA
C2:
PF076779=A2M_recep=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACACTGGAAAGCGTGCTGC
R:
TGGTCCAGGTAAATGGTCACCT
Band lengths:
159-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]