HsaINT0000085 @ hg19
Intron Retention
Gene
ENSG00000166535 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:23336]
Coordinates
chr12:9027021-9027608:+
Coord C1 exon
chr12:9027021-9027123
Coord A exon
chr12:9027124-9027566
Coord C2 exon
chr12:9027567-9027608
Length
443 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGACTTATTTCATTTCACAGATG
3' ss Score
9.9
Exon sequences
Seq C1 exon
CTCATTAAGAACACTCAGACTTACACCTTCACCATCAGCCAAAGTGTGCTGGTCACCAACTTGAAACCAGCAACCATCAAGGTCTATGACTACTACCTACCAG
Seq A exon
GTGAGAGGGCTGAGCTGAAATGAGATCTGAGATCTTACCTGCATCTCCCAACTTACTTCTGCCTCATTCTTCATGGCTTCTCTCTTAATTTTACAAATACTCCTTCCCAAGCCAAGTAGCACATAATTAAATTATCTAATCTCCTAAAATATTTTAATTCAGTTGTGTGCCATTTTTAAGTTGCGTACACTAGAGACATTTTATGTGATCGGAGAACAATGTGAACCATTGTTCTCAAAGGGCTATTTCTATTATTTTTGGTATGATTAATAGTTTGTCACAATGTACAAATATTAGTGATTGAAACTTTCTTGTAATTCTGAATATGCTCATAACCTGTAGAGATTCTCTGGAAGGGGCTCAAGCAGTAGCTTTTCTGAAGCATTTTCCCTCTGAATATAGGAGGCCCTCAAAGTAATAATATGACTTATTTCATTTCACAG
Seq C2 exon
ATGAACAGGCAACAATTCAGTATTCTGATCCCTGTGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166535-A2ML1:NM_144670:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.6=100)
A:
NA
C2:
PF076779=A2M_recep=PD(8.0=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)