HsaINT0000430 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69164074-69165083:-
Coord C1 exon
chr17:69164964-69165083
Coord A exon
chr17:69164155-69164963
Coord C2 exon
chr17:69164074-69164154
Length
809 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTTGGTGGGTTTTTTTTCAGCTC
3' ss Score
6.36
Exon sequences
Seq C1 exon
ATCTTAATATGTGTATCCACAATTATGGTATCAACTCAATATGAAAAACTCAACTTAATTTTGTGCATGATTTTCATACCTTCCTTCACTTTGCTGGGGTATGTCATGTTATTGATCCAG
Seq A exon
GTAAGCAGTGTTACCTACTGTGTCTCCAGTCTTGACCTTGTAGCCCATTAATAAAATCCTTACCCATTGTCGGAACAGGTGCATTTATAAAATTTTGAAGTTATTCAATGCTGATAAATTCTAAAAATAAGATTTTAAAGCTGTATAAAATTGAAAGCTGTCAAATTTGCTGAGATCACTATTCATACTAGCAGGAAGAGGGTCAATCCATGCAGAAATACAGCAGGAAGCCCAACCGTGGTTTATGAATTCCAGAGGTGATTCTGAGACAGGACTAAAACTTTTCCATTGTTATAAAACATGCTCTCTTGTGGTGAATCCATCTTGCCAGGGGATAGAAGTTTTTCATTTCAATGTTGATCAATGTCTAAAATCTTATTGGACTTATTGATTGCATACTACTTAGTGTCAATAAATTGCTTTTGGAGTGTATGACTTGTGAGTGAGGGAAAGAAAACATGATTCTATTAACCACTTCTGACAGAAACTAAATACCACTGAGAATTTTGGGGAACTGTGGGCAAATCTTGCCTACTTCATAGTTCTGTACTTTGTCACTCCCACTAAAGAGAAACTTGGAAATCCCTATTACATACAATTGGAAAATAAACAGTGTTGGAGTTCATAACTAAGGAAAGATGTCAGGTCATCAGTAGACTTTAGCATCAGAAAACAACTCTTCTCATCTCAATTCATGGAATACTTACTGTTGTCCCATAGAACATCAAGTATAATGTGGGTGTATTTAATGTGTAAATTTTATATTTATAGAGAAACTTGCATTTAACTGTTGGTGGGTTTTTTTTCAG
Seq C2 exon
CTCGACTTTATGAGAAACTTGGACAGTCTGGACAATAGAATAAATGAAGTCAATAAAACCATTCTTTTAACAACCTTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.8=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development