HsaINT0000445 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69221792-69222697:-
Coord C1 exon
chr17:69222533-69222697
Coord A exon
chr17:69221896-69222532
Coord C2 exon
chr17:69221792-69221895
Length
637 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GTTTTTCTTCTTCCTTAAAGAAC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GAAGAACAGTCATTGGGACACCAGATGAAGAGACCATGGATATAGAACTTCCAAAAAAATACCATGAAATGGTGGGAGTTATATTTAGTGATACTTTCTCATATCGCCTGAAGTTTAATTGGGGATATAGAATCCCAGTTATAAAGGAGCACTCTGAATACACAG
Seq A exon
GTAACTATAAAAAAACTGATTATAATTTTTTTTTGATACTTCATGGAATCCCCTGTTTGGAATGACTGATAGGAATATTAATACAACCAAGTAAAGAATTAATATACATTTCCCTCTGAACTTAATCATCAGTCTTTAACTTAGGATGAGTCTCATTATTTTGGCAACTACTCATATGTCCTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTCACCCTGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGGAACCGCTGCCTCCCGAGATCCAGTGATTCTCCTGCCTAAGCCTCCAAAGTAGCTGGGACTACAGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAATGATCCACCCGCCTCGGCCTCCCAAAGTGGTGGGATTACAGGCATGAGCCACTGCCCCTGCCATCATATGTTCTTTTTTTCTCCAATTCTGTAGAGTACTTTAAAAATCCTCTATATCATATAATCATAGGCTTTGAGCTAACATTTAGATATTTTGATTTTTGAGCCAAAGTTAAAGTTTTAATTCCAGGAGTTGACTCCATTATATAACTATGGACATGTTTTTCTTCTTCCTTAAAG
Seq C2 exon
AACACTGTTGGGCCATGCATGGTGAAATTTTTTGTTACTTGGCAAAGTACTGGCTAAAAGGGTTTGTAGCTTTTCAAGCTGCAATTAATGCTGCAATTATAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACACCAGATGAAGAGACC
R:
CTTGAAAAGCTACAAACCCTTTTAGC
Band lengths:
230-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development