HsaINT0000601 @ hg38
Intron Retention
Gene
ENSG00000107331 | ABCA2
Description
ATP binding cassette subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr9:137022702-137023840:-
Coord C1 exon
chr9:137022941-137023840
Coord A exon
chr9:137022866-137022940
Coord C2 exon
chr9:137022702-137022865
Length
75 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TGACATCCGCCATGGTGCAGGGT
3' ss Score
4.57
Exon sequences
Seq C1 exon
TCTGTAAGTGAGCGGCCACCTCCTCCTGGCTGGCCTGGGCAGCAGCTGCGGGGGGCCCATGGGCCGTCCTGGCTTGAGCGCCCTCCCCGCTTGCATTAACAGCCCTCCCGGGCCCCCTGCCGGCCTCAGGAACAGCTGGCTCCAGATGGGGGGTGGCAGGCAGTGAAGTGGGAGGTGGTAGGGAGTGAAAGGCCCGGCCACCTAAAGGCACAGCTGGTGCCTGGGTCAAGCTGAGGCGGCATCTCTCTGCCTGGCCTTGCCTTCTAGGGCTGGGGTGCCTCGGCTTCTGGGCTGAGTCTGGGCTGAGGCTGGGCTGGCCTGGGCTGGGGCTGGAGCGGCCTGGCTACTCTCCCTTCATACTCCTTCAGGCTCTTGCACTCACTCTGCTAACCAGCTGGCCAGAGGTCAGAGGTCACTGCCCAGAGGGGGTCCTTTGTCCTCCCCTGGGCTCTGTAGGCAGTGCCACACCTGAAACGTTTTCGGGGGGAGAGTGCCAGGGCATGTGGGCCTGCACTGGCTGAAAGGAAAGGAATGCTCTGGGAGTTATGGCAGAAGGGGTGGTGAGTGGCTCTTTGACCTCTGACCTGCTGGAGTCATTCGCCCCAGAACGCTTGGCCTGTAGCCCAGCTGGGGCCAGGGCTCTGTGCCGCCTTCTCCCTAACGCTGCTTCTCCTTCCTGACTTTCTCTAAATTTCTCCTCTCGGCCTCTGTCTCCCTCCCCTTCTGGATTCCTCTCTCTCTCTCTCCCCTTTCACCCCCGACCCTGCCCTCTCCCGTGGGTCTGCCAGCCTTCTACACAGCGGCGCCCCTGACGTCTGCCGGCATCCTGCCTGTCATGCAATCGCTGTGCCCGGACGGCCAGCGAGACGAGTTCGGCTTCCTGCAGTACGCCAACTCCAC
Seq A exon
GTGAGTGCCCACCCGCCCCTCGGAGCACCCACCCCTCCCCAGCCCATCCAGTGAGTGACATCCGCCATGGTGCAG
Seq C2 exon
GGTCACGCAGCTGCTTGAGCGCCTGGACCGCGTGGTGGAGGAAGGCAACCTGTTTGACCCAGCGCGGCCCAGCCTGGGCTCAGAGCTCGAGGCCCTACGCCAGCATCTGGAGGCCCTCAGTGCGGGCCCGGGCACCTCGGGGAGCCACCTGGACAGATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107331:ENST00000464876:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCCAGCCTTCTACACAG
R:
TGGGTCAAACAGGTTGCCTTC
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development