MmuINT0007809 @ mm10
Intron Retention
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25433098-25433457:+
Coord C1 exon
chr2:25433098-25433209
Coord A exon
chr2:25433210-25433293
Coord C2 exon
chr2:25433294-25433457
Length
84 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GATGTCTTACGGTGTTCCAGGGT
3' ss Score
7.46
Exon sequences
Seq C1 exon
CTTTCTACACCGCAGCACCGCTGACATCAGCCGGCATCCTGCCCGTCATGCAGTCGCTTTGCCCTGATGGCCAGCGTGATGAGTTTGGCTTCCTGCAATATGCCAACTCCAC
Seq A exon
GTGAGTACCCCTACCTCACGCCTTGGGAGGCAGGTACCCTCACCCCTACCCCATAGCAACAGCTGATGTCTTACGGTGTTCCAG
Seq C2 exon
GGTCACCCAGCTTCTGGAACGCCTCCACCGTGTAGTGGAGGAGGGCAATTTGTTCGACCCAGTGCGACCCAGCCTGGGCTCAGAGCTCGAGGCTCTGCGCCAACGTCTGGAGGCCCTCAGCTCAGGCCCTGGCACCTGGGAGAGTCACTCAGCCAGACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944:ENSMUST00000102919:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAATATGCCAACTCCAC
R:
AGGTCTGGCTGAGTGACTCTC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types