HsaINT0000721 @ hg38
Intron Retention
Gene
ENSG00000154265 | ABCA5
Description
ATP binding cassette subfamily A member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr17:69264735-69268056:-
Coord C1 exon
chr17:69267943-69268056
Coord A exon
chr17:69264906-69267942
Coord C2 exon
chr17:69264735-69264905
Length
3037 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTGTTTTTCATTTTTTTTAGATC
3' ss Score
11.35
Exon sequences
Seq C1 exon
GAAATTACTGATATAGTTTTTAAAATTGAGCTGTATTTTCAAGCAGCTTTGCTTGGAATCATTGTTACTGCAATGCCACCTTACTTTGCCATGGAAAATGCAGAGAATCATAAG
Seq A exon
GTAATGACTCAGTTAAAAATATATAATTTGCTAATAAGAAGTGTCATATAAAAATAACCTATTTGCTTGATTGCAAGGCTTAGTATAATTGTTATTTCAGAAATAAGTAAATGGAATATAAATACATTTATTATAGTTTCTTATTGTAATAAGTGATAATTAATATTTATTATTTGAGACTTGCTACATGCTTTAAAAATTATATTCTCTAATTCTCACAACATTGTGAGGTAAGTTTTTTGTTACTGATTTCTTATAGATCAGGAAATCAAAGATGGGATTGTTCATATGACTTGCTCAGGTTGACTCAACTTGTTTAAATTGTGGATTTGGGAAGTGACTGTGATCTTTATGTTCTTAACTGGCAAACTAACATGCCCGTCCCTTTTATCCTTTAACAGAGGTATTAAGTAGTCAAGGTGCTAAATTCTTATTAATGGAAAAAAAATAGATGAAAGTGATTGTCATCATTAGGGCCTTGGAGAAATTGCTAAGTATACAGAGGTTCTTTGGTATTCTTTCACTTTCTTTTTACGCCTTTCCCTTTTGTTTTCCTTCAGGCATATAGCGATCTTGTACAGTCTTTGGTTGTTCAAAGCCTCCCACTTTTTCACTCTGCTGAGATTATATCTTACTGCTCTAATAAAAATTCTGATCTTCTTCATGGATGATCTTAATTCAGTAAAAACAAATTTGTCTAAATTAATTTACAGACTGTGATGAATAATGAGCTCATTATTTTAATAAATTCTAAAAAAATAAATTGTAGGCCAGGCGTGGTGGACCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACCTGAGGTTGGGAGTTCGAGACTAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATAGAAAAAAAATTAGGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGAGGGTGAGGCAGGAGAATCACTTGAACCCGAGAGGCGGAGATTGCAGTGAGCCGAGATCATGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAAACTCCATCTCAAAAATAAATAAATAAATAAATAAATAAAATAAATAAATACATTCTAATAAAAATTTTGTTATTTGTTTACTATAAAAGTAACACATATCTCTATTTTTAAAATAATATTCAATTTTTGTTAAATATACTCATTGTAGTAATGTATAAATTATAGAAAAGTATAAGGAATATAGAAATCCATAACCCACTGCACAATAATAAAATTTACTGGACATTTGCATTTTCTTTCTTGTTTCAACTGAAACATTTTTTTTCCAATATAAATTTTTTATTTTTATTTATTTATTTTTTAATTTTTTTATTTATATATATATATATTTTTATTATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCACTGCACCCACTAACTTATTTTTAATTAAAGTTTCTATTTTGAGATAGTTGTATATTCATGTTTGTTTGTTAGAAATGACAGAGAGATCCTGTGTACTCTTTACATTTTGTCCCAATAATAACATCTCGTAAAATTATAGTACAATGTAACAGGGTATTGGCATTGACACAGTCAAGATACAGAACATTTCTGTCACCAAAAAGATTCCCATTTTTTGCTCTTTCCTAGCCTCTCTGACCTGTGGCAACCACTACTCTGTTCTCTATTTCTGTAATTTTGATAGTTCAAAAATGTAAAATGGCATCACAATAAGTTTTCTTTTGGGATTGGCTTTTTTCAAATAGCATTTTTTTTGAAGTTCATCCTATTTGTATTTATCAATAATCCATTCCTTTTCATTGCTGAGTAATATTCCATGGTATGGATACATCACACTTTCTCTAACCATTTGCCTGTTGAAGAACATTTGGATTGTTTTCCGTTTTTGGCTTTTGTAAAGTTGCTGTGGACATTTGCATACAGGTTTTGTGTAAACATCATTTTCATTTCTCTGAGATAAATGCCCAAGAGTGCAATTGCTGAATTATACATGTTAATTTTATAAGAAATTGCCAAATTATTTTCCAAGATGAGTGTTCCATTTTATGTTATCCCTACCAGCAGTGTGTGAATGACAAAAGTTTGAATTATCCAAAATAATTGCATTTGCCTTAGCTTATGTTTTTATTCTTGTATTAGAATTTACATGTGTCTCATGTTCTCATAATTCATTGAACAGAAAACTTGCCAATTTTGTTCATTTCTCCTCTTCTTAACTAATCTTTATATTTCATGCTTCCTTTATCTCTGTGGACAGCTCTTTCATATAATACCTTCAGTTATTAGGAGTAGATATTTTTATAGATGACAAAAATCAACTAAATAAAATTGTTAGGTATTTGGATTTATGAAATATTTTAGAAATTTCAAATTAAATGAGAACATGAGATAGGAAAACTATGATCATTTGAGTTTACCATTAACAAACTTGTGACGTAAATAACACCTTAGATTTATATGCTATACCAGTGTACACAAAAGGCTTTGAACATTTCAAAAGCTTTCACTTAAGCTGAAAGCCTTATGTAAATCCAAAGGATACTTGGCAATTTATTAGTGTTTTTATTTATGAAAGGTTCATTTTTAAAACTGAGAATTCTTTTTCTGTGTAAACATGTCTTCCCATCTGTTTCCACAGTATTTCAAAAGTAGTAATGTTTTGGCTATTTATTATTTGTATAGCTGTAACCCCAACCGCCATGACACCTTTTGCTTTATTTTAATCTCAGTTTCTTGGCAGCACTACTGTATTCTGATTCTTAAAAATTTTGTTGAAATTGTTACATCTCAGAAATAATGAGCCAAATTAAAGGCTAAATGGAATTTGTATTTAGTGTGAGGGGGACTTTTATTACCTATAAGCCTGGAATGTAACCTTTTTGGTTTTGCTGATGTAAAATTAAGAGATCTACAATAATTTACTAATTTATTTGTGTGTTTCTAAAGTGTCTAAAATTATAATAAATTGTTTTTCATTTTTTTTAG
Seq C2 exon
ATCAAAGCTTATACTCAACTTAAACTTTCAGGTCTTTTGCCATCTGCATATTGGATTGGACAAGCTGTTGTTGATATCCCCTTATTTTTTATCATTCTTATTTTGATGCTAGGAAGCTTATTGGCATTTCATTATGGATTATATTTTTATACTGTAAAGTTCCTTGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154265:ENST00000392676:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(6.8=92.9)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development