HsaINT0000742 @ hg19
Intron Retention
Gene
ENSG00000154265 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:35]
Coordinates
chr17:67293332-67297427:-
Coord C1 exon
chr17:67297280-67297427
Coord A exon
chr17:67293501-67297279
Coord C2 exon
chr17:67293332-67293500
Length
3779 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTTTAATGTTTATTTTTCAGGGG
3' ss Score
10.35
Exon sequences
Seq C1 exon
GTCATGCATTTAGAAGATTTTAATGAAGGTGCTTCATTTTCAAATTTGACTGCAGGCCCATATCCTCTAATTATTACAATTATCATGCTCACACTTAATAGTATATTCTATGTCCTCTTGGCTGTCTATCTTGATCAAGTCATTCCAG
Seq A exon
GTATGCAGATGGTTTTTGAATTTTACTTTAAAGATTTTTAGGCTTTTTTGCCCACATAGGGTCAGCTTAATTTTAAGATTTTTTTTCCTAACCAGGGTACCCTAAGTCATATTCATTGTTAAAGCTTTTAATTTGACTTTAAATAAGTATATTTTGTACCTTAGGCTATAGCCACTAGTGAACATAAAGAGATCGTGTAAAAAGAGAGCAGTTTTGAAAGCCTTAAGTCTCTAGTTGATCTTACCTTGGTCCTTCTTTATATCAGTCTTTTTTAATTGAAGTATTTTATTTTACCCTCTAAGGTCTAAAACTATGAAGTGATCTTGTAACTCCTACCATTTTCTTTATCTCCTGTCCACATCTATAGCCAATATAGCAAACTCCTGTAGATTCAATAGTAATATTAAGTATTGAGCATATTTCCTTTTCCACTTGTATTCCTCATTACCTGTGTCTGTATTCTACACCTGTACTGTCCTGTATGGTAACTACTAGCCATGTGTGGCTTTTAAAATTTAAATTGATTACAATTAAATCAATTAACAATTTATTTTTTTCAGTAGCACAGGCCACATTCCAAGTGCTCAGTAGCCATATATGGCTGTTAGTTACTAAATTGCATGGTGCAATCTAGATGTTCTGTAGAACATTTTGACCATTATAAAAGTTGTATTGTGTAATACTAGTCTAGACTAGAGGTTCCCAACCCCCAGGACACAGATCTTACTAGCTGCCTGTGAGGAACTGGGCTGCACAGTAGGAGGCATGTGAGTGAAGCTTCATCTGTATTCACAGCTGCTCCTCATTGCTTGCATTACCACCTGAGCTCCACCTCCTGTCAGATCAGTGGCAGCATTCAATTCTCATAGGAGTATGAACCCTATTGCGAACCGCGCATGTGAAGGATCTAGGTTGCATGCTTCTTATGAGAATCTAATGCCTGATGATCTGTCACTGTCTCCCATCACCCCCAGATGGGACCGCCTAGTTGCAGAAAAACAAGCTCAGGGCTCCCACTGATTCTACCTTATAGTGAGTTGTATAATTGTTTCATTATATATTACAATGTAATAATAATAGAAATAAAATTCACAATAAATGTAATGCATTTGAATCATCCTGAAACTATCCTTGCTCCCTGTCTGTGGAAAAATTTTCTATCACAAAACCAGTCCCTGGTGCCAAAAAGGCTGGGGACCACTAGTCTAGACCATTGCAGTATCTCTCATCTAGTTACATACCTCAAGTCTGTCTGAGCACTTCACCCCTTTTTTTGAGGTTTTATTATTTTTTAATAGATTTTTGGGGAACAGGTGGTGTTTGGTTACATGAATAAGTCCTTTAGTGTTAATTTCTGAGATATTGGTGCACCTGTCACCCTAGCAATGTACACTGTACCCAGTGTGTATTCTTTTATCCCTCACCCCCCTCCCACCTTTTCCCTGAGCCCCCATAATCCATTGTATCGTTCTTATGTCTTTGTGTCCTCATAGCTTAGCTCCCACTTATGAGTGAGAACATACAATATTTGGTTTTCTATTCCTGAGTTACTTTACTTAGAATAATGGTCTCCATTTCCATCCAGGTTGCTGCAAATGGCATTATTTTGTTCCTTTTTATGGATGAGTAGGATTCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTATCACATTTTCTTTATCCAGTTGTTGGGATGGGCATTTAGGTTGGTTCCATATTTTTGTAATTGTGAATTAATTATACTGTTATCAACATGTGTGGGGAAGTATATTTTTCACATAATGACTTCTTTTCCTCTGGGTAGATGCCCAGGAGTGGGATTGCTGGATCAATCGGTAGACTTACCTTAGTTCTTTAAGGAATCTCCACACTGCTTTCCATAGTGGCTTTACTAGTTTACATTCCCACCAACAGTGGAAAAGTGTTCCCTTTTCACCACATCCATGCCAACATCTATTATTTTTTGATGTTTCGATAATGGCCATTCTCGTAGGAGTAAGGTGGTATCACATTGTGGTTTTGATCTGAATTTCCCTGATCATTAGTGATGTTGAGCATTTTTTCATGTTTCTTGGCCATTTGTATATCTTATTAGAGTTATCTATTCATGTTCTTAGCGTACTTTTTGATGGGATTGTTCGTTTTGTTCTTGCTGATTTGAGTGACTCATAGATTCTAGATGTTAGTCCTTTGTCAACATATATATATAGTGAAGACCTTCTCCCACTCTGTGGGTTATCTGTCAACTGCTGATTATTTCTTTTGCTATGGAGAAGCTTTTTGGTTTAATTAAGTCCTATCTATCTTTGTTTTTGTTGCATTTGCTTTTGGCTTCTTGGTCATGAAGTCTTTGCCTTTTTTCTGATGTTATCGTCTCAAATTTTTATGGTTTCAGGTCTTAGATTTAAGTCTTTTATCTATCTTGAGTTGATTTTTGTATAGGGTGAGAGATGAGGATCCAGTTTCATTCTTCTACGTGTGGCTTGCCAATTATCCCAGCACCATTTGTTAAATAGGGTGTCCTTTCCCTACATTTATGTTTTTGTTTGCTTGCTGTTGGAGCAGTAACAGTTCCCAGAGGAATGCCAAGTACTGATAAAATCAATTGGAATCCTCTGTACTTGGCATCAGATCCCTTTGAAATGTGGCCAATCTAAAAGAAGAGTAGATATTTGAAAAAAATGAGGAGTGTAGGTATTTTGAGAGGGAAAAGGGAGAAAATGGAACATGTTGTCTGGGCAGTTACCACTGTATGCCCTTTCTTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCTCTCTTTCTTTCTCTTTCCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTACCTACCTTCCTTCCTTCCGACAGGGTTTTGCTGTGTCTTTTTTGAGACAGGGTTTTGCTGTGTCTTCCAAGCTGGAGTGCAGTGGCACGATCACAGCTCACTGCAGGCTCAGCCTCCTGGGCTCAAGTGATCCCCTTGCCTCAGCCTCCCAGGTAGCTGGGACTACAGGCATGCACCACCGCATCTGACTAATTTTTTGTATTTTTTGCAGAGACAAGGTTTTGCCATATTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCAATATGCCAGCCTCTGCCTTCCAAAGTGTTGGGATTATAGGTGAGAGCCACCATGCCTGGCCTCATTGTATACCATTTCTAAGTCTCATATTTCTATCCTGTTGTTTTGTTGCTCTCCATAATTCTGTAGTCTTTTCCATGAAGCATATCCACTTTTCTAGTTACTACCTATTTTCAAAGATCATTTAAGATGGTGCCCATTCAAGTCTTCAACACATTCAGCCTGTGTTGTGTTCTTGCCATTTGCTATCTACTTGTACTCATAAAGGCATTAGTTCCTTTAGCATAGAAGATGTGCTTTATTCACCTTTACCTCCCACTCAGCAATTCTGAAACTATTTATGGACTAGAATTATTTATCAATAAAACTTTGATTCATACAATATTGATTTAATACAATACAGCTAATCTTTATTTACTTATTACTTTTCAATGACAAATGAAAATTGTATATATTTATTGTGTACAACATGATGTTTGGAAATATATATATGTTGCGGAATGGTACCTAAACTTTAGATGCAGGTTGTCATATGTTTGAAATGCTGTCTTTATGATTTAAAAACTAATTATGGTAACTCAGTTTTTTAATGTTTATTTTTCAG
Seq C2 exon
GGGAATTTGGCTTACGGAGATCATCTTTATATTTTCTGAAGCCTTCATATTGGTCAAAGAGCAAAAGAAATTATGAGGAGTTATCAGAGGGCAATGTTAATGGAAATATTAGTTTTAGTGAAATTATTGAGCCAGTTTCTTCAGAATTTGTAGGAAAAGAAGCCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154265-ABCA5:NM_018672:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)