BtaINT0011137 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61884376-61887517:+
Coord C1 exon
chr19:61884376-61884523
Coord A exon
chr19:61884524-61887348
Coord C2 exon
chr19:61887349-61887517
Length
2825 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
TTTTTTCCTGTATTTTTCAGGAG
3' ss Score
11.59
Exon sequences
Seq C1 exon
GTCATGCATTTAGAAGACGTTGATGAAGGTGCTTTAGTTTCTAATTTGACTGAAGGCCCGTGTCCTCTAATCATTGCTATTATGATGCTGATTCTTAACAGCATTTTCTACGCCCTCTTGGCTGTTTATCTTGATCAAGTTGTTCCAG
Seq A exon
GTACGCAGATAGTCACTGAATTTTACGTGAAAGATTTTTCAGGTTTTTGTCCACCTAAAGTTACCTTAATTTTTTTTTTTCTTACAAGATTAATGGTTTATTGTTTTTGATTTTTTAATATTCTTTTTGAAATATTCATTTATTTTTAATTGTGGGATAATTGCTTTGCAATATAGTGTTGGTTTCTGCCATACATCAACATGAATCAGCCACATGTATTCATGTCCCCTCCCTTTTGAGCCTCCCTCCCACCTCCCTCTCCATCCCACCCCTCTGGGTTGTCACAGAGCACCAGGTTGAGCTCCCTGTGGGTTAACCTAATTTTAGATTTTTTTCTAGCTGAGTACTCTAAGTCGTGGAGAAGGCAATGGCACCCCACTCCAGTAGTCTTGCCTGGAAAATCCCATGGATGGAGAAGCCTGGTAGGCTGTGGTCCATGGGGTCACTAAGAGTCGGACACAACCGAGCAACTTCACTTTCAGTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAGCCCACTCCAGTGCTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTGTGGGGTCGGACAGAGTCGGACACGACTGAAGCGACTTAGCAGCACTCTAAGTCGTTTTCACTGTTAACAGCTTTTAATGTAATTGTAATTGTATTTTGTACCTTATACCTTAACTTCCAGTGAATGTAAGGAGACTGGGCAAAAAGAGACCAGTGTTTTGAAAGCCTTAAATCCCTAATTGAATTTCCTAACTCAGTCCTTCCCCATGTCCATTTTTTTGGCTGAAGCGCTTCACTATTGTACCCTCTAAGATCCGAGACAGTGGAGCAACCTTGTAACCTCTCCCATCCCCGTGTCTTTTATCCTCCACCTACCTCAAACCTGTGCAGGTTCAAAATACCGTTAAATAACTCCTGCCCCCTTTCCTCTCCCCCTTGAGTTCCTCGTTCATTTTGTCTGTGTTCTTGATCTGCAGTCTTACATGACAAGACACCTGTGACTTTTAAGTTTTAATTACTTATAATTGAACAAATGAGCAATTCCTTCCTCAGGAGGGCGAATGTTGTTTCAGTCGCTCAGTCGTGTCCCACTCTTGGTGACCCCATGGACTGTAGCCCGCCAGGCTCGTCTGTCCACGGGATTCTCCAGGCCAGAATACTGGAGTGGACAGCCATGCCCTCCTCCAGGGGATCTTCCTGACCCAGGGGTTGAACTCAGGTCTCCCACGTTGCCGGCAGATTCGCCCTCCTCCAGGGGATTCTCCCCACCCAGGGATGGAACTCCGGTCTCCCGCGGTGCCGGGAGATTTTCCTTCCTCCAGGGGATCTTCCTGACCCAGGGGTTGAACTCAGGTCTCCCGCAGTGCTGGCAGATTCGCCCTCCTCCAGGGGATCTTCCTGACACGGGTTGAACCCAGGTCTCCTGCATTGCTGGCAGATTCTTTACCAGCTGAGCCCCCAGGGAGCAGCGCAGGCACCTGCCGAGGGGTCAGCAGCTGCGCCTGGTCACTGGTTACGGTGCAGACGAGGTCTTGTCCACTGTTGCAAAGTCCTGTTTGGCTGCACTGTTCTAGACCATCGCAGTAGTGCTCATCTAATTACCTACCTCAAGTCCAAGAACCTTGCCATTGCCTTTAGTCAACTGATCACCTGCTCAGAAACCTTGCTGAGCACATCCTGGTGAATTAAAAAGAAACTTGTCGAGTGTTGATGTCCTGCACGATGCTTTTATACATTCAGTCCCTTGTTACCACTGTTACCCTCTCCTTATTGTATTTTATATCCATCCATTCAGTCCTGTTTATTTAAACACATCTCCAGTGTAGCAGTTAGATTATGTTTAGTTACTCATGTAACAGAGGACCTTTTTTTAATTGTCTTAAACAAGAAGGAAATCAGTCTCTTCATTCAGAGTCCAGAGTCAGGGTGGACTCCCAGTTGGTTGCCTTGCTTGGCTGTGTCATCAGGGTCCCACCTTCTCCATGTTGCTGCTCCTGTCTCAGAGTCTGGTGGATTTATCTCCTGGTGCCTGCACGGGGTTGCACTTCGTTCACGTCCAGTGGGAGAGGGACAGGAGACTTGTGCCCAGCAAGCCCTTCTCTTCTCTTTAGTTGGTGCCTGCTTGTGGCTGAAGCAGAGGAGTCGCCAGAGCCTGCATGGTGCCCATCTGGTCCACTGGACTCTCTCTAGTTGGGAGCGGCTCCCTCTGAAACGTGGTCATCAGTGGGCGCGTGTTAGAAAGGATGGGGAGTGTTGGTTCCTTGGGGAGAAAGGGAGGAAGCCTGCCTGTGCCGTGGGCAGCTAGCTAGACTGGAGTCTCCTGTGTTGGCCCTGCTCTGTTACTCTCCTGCATCGAAAAAGTCCTTTCTGTGAGCTGTAGCAGCCTTTCCGAATACTGTCCGCTCCCAAAGACTAAGGTGATGCTGACTCAAACCTTCAGAATACCTCGATGTACCCTCTTCACCTTCTGAACTCTTGCTGGCACTCATGCCTCACGTTGTGTGCCGCGTGTTTGCCCTTAGGCATGTACGTGTCCTCATAATGATGGAAGTCTCTAGGGTGGAAAATGTGCTTTGCTTACCTTTTACATTCCATGGACTTGCAGCAGCCCTGAAACTTTATGGATAAGAGTTATCTGTCAGTAAGACTTCTGTTTTTCTCACATTGATGACTTAGTAATTTATGTCTGAACTTGAGGTTGTCTTAGTTTACACAGACTGCCTTTCTGATTTAAACACTAGTTTTCAGAAATAATTTGTTAGGATAACTCAGTTGTGTGTGTGTTTTTTTTTTCCTGTATTTTTCAG
Seq C2 exon
GAGAATTTGGCTTACGGAGATCATCATTTTATTTTCTGAAGCCATCATATTGGTCAAAGAGCAAAAGGAATTATAAGGAGTTATCAGAGGGCAACGTGAATGGGAATGTTAGTTTTAGTGAAATTGTTGAGCCTGTTTCTTCAGAATTTATAGGAAAAGAAGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747:ENSBTAT00000003563:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development