HsaINT0001883 @ hg19
Intron Retention
Gene
ENSG00000175164 | ABO
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) [Source:HGNC Symbol;Acc:79]
Coordinates
chr9:136135223-136136777:-
Coord C1 exon
chr9:136136721-136136777
Coord A exon
chr9:136135271-136136720
Coord C2 exon
chr9:136135223-136135270
Length
1450 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCTGTGTTCTCATTCTGCAGCAT
3' ss Score
10.13
Exon sequences
Seq C1 exon
TTACGGGTTCCTAAGCCCCAGAAGTCTAATGCCAGGAAGCCTGGAACGGGGGTTCTG
Seq A exon
GTGAGTGCAGGGAAGAGCAGGTGGAGCATCCATGCTGGCCGGGGTGCTGGCTGTGGGCGGGGGTCCCACTCTGGGAACTCCCCCTCCCCTTCCTGGGCCCGCTCTCTATGCTCTGCCCAGTGTAGACATGCTCAACTCTGTGGCCTTGAAGGGTCACCTGGATACCTCTGGAGTCAGCCTTGACCTCCCTTCTGACCTCCAGTCTCCAACTCCAGGCTTACCCAGAGTTCCCATGCATGGTCTCTGCTCCCCCATCCCCACCCCTCCTCCACCAGCCATCCTCAACTCTCCCTTTGCTCTCACCCCTACACTGGGTTCCCAAATCCTGCCAGCCCTGCTCTTCAGCAGCTCGCGTGCCCACTGGCCTCCCTGCCTTCGACGTCCTGCTCCAGGGCTCCGGTGGGGCTGCCCTCATCTCTGTGACAGCCTCAGACTTGTCTCCCCATCCCCATCAGCCCTGTCCCCCTTCTTCTCACAGTAGCTGGAGTGATCTTTCCAGAACATAAGGTAGGAGGCTCTCCATGTTCTGATCCTGCCTTCCTGACCTCCCCAGCCTCATCTCTCCCTCCTCTGCCCTCGCCCTCTGTGCTCCAGCCAACGTGGCCTGTCACTCGTCCACCTGCCATACTGTCCTGACTCCAGGCCTTTGCCTGTGCTATGGCCTCTGTTGGGACCACTCTTGTCTCTCCCCTGCTGTGTCTGCTAATTCCCACTCGTGTCAGTGATCCATGGCTGCAGAACACACCACTCCATCCATGGAAAACAATCACAATCATTGATTACTATCTCTCCCTGGGCTTCCTGGGGTGGACTGGGCTCAGCTGGGTGGTTCACTTTGGGGCCTCAGCAGTCATGGGCAGACAGTGGCTGGGGTCACTGCAAAGACTTCCCTGCATCTCTGGCAGTTGATGCTGGCTGTCATCTGAGACACCTACCCAGGGCCTCTCCCTGGGGCCTGGGCTCCTGCTCAGCTTGGTTGGGAGGCTCCAAGACCAACATCCCAAGAAAGATGAGACAGAAGCCAGATCACCTTTTGGGCCTGGCTTCAGAAGTCACCCAGCGTCACTTCTGCTGCATTTATTTCTTAGAAACACAGAATATCAGACCCCATCTCTTGATGGGAGGGGGCCTCATGGTTTGTAGACATGTTCTGAAACTCCACTCTGCCCGGCCTTGGCTTCGACGTGTCTGGTGAATGTGTGGGCTGTGAGGCTCCCCGAACGTAGACCTCAGACTGCAACGTTGGCCGTTACAGGGTCTGGCACACGGGCCCACGCCAGGCCCATCGCCACAGTGATGGTTGTTCTGTGACTGTTTCTGGTGGCCTCTGCTCCACACTCCAGGCTGACGCTGTGTCCCTTCCACTGGGACCCTCGGGTGGCTTCCATGCACTTGTGCCCTAAATCCTGCTCCTAGACTAAACTTCATCTCCTGTGTTCTCATTCTGCAG
Seq C2 exon
CATGGCTGTTAGGGAACCTGACCATCTGCAGCATGTCTCGTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175164-ABO:NM_020469:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)