MmuINT0009147 @ mm9
Intron Retention
Gene
ENSMUSG00000015787 | Abo
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase) [Source:MGI Symbol;Acc:MGI:2135738]
Coordinates
chr2:26702094-26703827:-
Coord C1 exon
chr2:26703771-26703827
Coord A exon
chr2:26702130-26703770
Coord C2 exon
chr2:26702094-26702129
Length
1641 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TCTGGTGTTTTCTTTTTCAGGAA
3' ss Score
12.8
Exon sequences
Seq C1 exon
CTACCTGTTCCTAAGCTTCAGAAGCCAGAACTTGGGTCACCCAGGAGCTGTGACTAG
Seq A exon
GTGAGTGGGCATTGAGAGACAGACAGAGACAAAGATGGAAAGGGAGAGGAAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAAGGAAGAAAGGGAGAGAGAAGAGAGGGAGAGAGAGAGGGAGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGGTGTGTCATGTTTGTATGTATGTGTCATATGTGTGATCGTGTGTAGGGGGATAGATAACTGGCTGAATGGACATTTTGCTGCAAGCTGCCTAGTGGCCTTTGCCTATCTATACCACCTCCTGATTGGATAGCTCTAGACCTTCTTTATGCTGCCCAGAGCAGCTTCTGCTGCCCCCTGCTGTCTTTAATGGGCATATGTATTCTTCTCTGGCTTAAGAATGGCTTCTGCTCCCCACCCACCTCACCAGCAGTCTGCTGAGTGCAATATTAGTCTTTGGCCTTCTATGACCAGACCCAAGTTGGAGACCCTCTCCATCCCTACCGTTTCCATATCCTGTTAGGCTGTCTTTTGGGAAGGCATCCCCTGACTTTGCCTGCTTTCCTGAGCCTTCTGTGGCCTTGCACCAGCTACATGCTTGTCTGTCTTAACCCTACTTTCCTTCTAGTCGCTAATGATCCTTTAGAACAGAAGGTAGGAGGCTTTCTGAGGTTGAATCCAACCTGTTGACACTTTCCAGCAGCTGGTCCCTCTGTGTTCCCTCACAAGCCATGCATGCTGTTGGACTGGAGCTCTGACTTTGCTTTTTGTCTATGCTGTGCTTCTCAGTAGACTACCTGGCCTCCCAAGCACTCTTTGTTGCTATCCCCACCAGTTCACTCTTGTGTCAGCTTTACACTGCTGCAAAGCACTCACTTTCATTTCTGTTGGGAGACAGTTACATCTTTTATGGCTATCTCTCTAGAGGTCTCTGGTTTTAAGTGTAGGAGTGTGTTGCATGCTTTTTTGTTTGTGTACCACATTCATGCCAGTGCCCAAAGAGGTCAGAAAAGGGCCTGAGGTCCCCTGGAACTGGGGTCATAGACTGTTGTAGGTCTCCATGTTATCATTGGGAACTGAACTCAGTGTCTCTGCAAGAGTCGCCAGGGTTCTTACTGCCGATCATCATTCCAGCCCTGCTCTTTGGTTCTCATACCATCATAGGGCATGCATCTTGCTAGCAGAAGTGGCTTTTGTCCCTTGGGGATTGGCATCTTTTGTGGGGACATCTCACTGCCACACATTGCCCCAGGTCTTTTATGGGAATCACTTTACACTGATGATGGGACTGGATTCTGAGAAAGACAGAGAGCCAGGACACTGTGCCGCCAGCGAGGACAGGACCAAGGCAGGCTGCAGGCCCATGTGGGATGCTCAGATCTACTAGGGACAGGCATGTTCAGTTTCATCCAGTGTGTGAATTAAAGTAGTCCTTAGATTTCCCAGTCTTAACCAGGGCTGGGTGTGGGCATGTATCTCGTGTCAAGCAAGACTGTGATCTTCCTGCTTTGGTTCATCCTTGGATCATGGGCAGACAGGGTGGCTAGCTTGCCACTGCTCATGAAGGTCTGTTTGCCTGGTGCATGACTGCCAGTGATGTGCATCCAGTGACCTTTCTGTCAACTTGAGTTCTGGTGTTTTCTTTTTCAG
Seq C2 exon
GAATGCCTATCTGCAGCCAAGGGTGCTAAAACCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015787-Abo:NM_030718:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(4.3=65.0)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: