RnoINT0011413 @ rn6
Intron Retention
Gene
ENSRNOG00000039906 | Abo3
Description
histo-blood group ABO system transferase 3 [Source:RGD Symbol;Acc:628609]
Coordinates
chr3:5120998-5122317:+
Coord C1 exon
chr3:5120998-5121045
Coord A exon
chr3:5121046-5122281
Coord C2 exon
chr3:5122282-5122317
Length
1236 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTTATTTTTTTTTCTTTCAGGAT
3' ss Score
12.61
Exon sequences
Seq C1 exon
CATGGCTACCAGGCAGACGGATGTCCAGAAAGTTGTAAGTGTGCCAAG
Seq A exon
GTATCTGGCCCTCACATGGTGCTCTCAAATCCTGCATTAGAGGTTTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACCATGAGCAACTGGGAATTTCCTTCCTGCACCTGAAATGGAGCATATAACTCTCTACTAACTGCATGCCATTTGGCTTTTAAATAACCAGGATAGCTCAACTGGTACAGAGCCAAGTTTACATGTGTTCACCACCATTCTCAGAGCAACATACATCACTCATGAGTTAGCATTCTCACCATTGCAAGAGTCCAGTTCAGCAAGCAAATTCATGCTGTGGTGCAGCCATCAGCACTACCCACTTGCAGAATATTTCATCCTGTAAACTGTGCCCATTAAACACTGATTCTTACTAGGGGTTCTGTCACCAACCTTGCCTCTTCTGTGCTGTTCTCTGATCATGGCCAATCAATAGTGCTTCCAAGGGCTGGGTCCTGAAGAGTGCCTGCAAGACTCACCCAATAAGATGTCAAAAGGCTTCATCCCTGAGCAGAAATTTCCTGTGATGATTTTTTTAGATGATTTATTTTCATTTTATGTGTATGAATATTTTGATTGCATGTGTGTCTGGGTGCTGCATTTGTTCTTGTGCACAAAGAAGCCAGAAAAGGGCCTCAGTTCCCTAGTCCTGGACTAGGACCACTCACTGTTTTGAATTTCCATATGGGTGCTTGGAGCTAAATCTTGTGTTTCTGCAAGAGTAGCCTGGGCTTCTAGTGCTGAGCATCATTCTACCCTGCTGTCTGTTTTACAAACCATCATAGGGTATGAAGCTTACTAGCAGAAGTGGTTCTTCTGCCATGGGGCTTGGCATCCTGTGCAGTGACAACCCACTGCCATACAGTGAGCCAGGAGTTTTGTGGAAAACACTTTGCACTTTTGATGAAAATGGTGCCTGACCAAGACAGAAAGCCAAGATGCTGTGTGCCACTAGCAAGGAGCTGCAGGACCAGGTGGGATGTCAGTATATACCAGGAAAGACATACGCAATCTTGTGAATTAAAGTAGTCTTTAGACATCACAGCTAAGGCTGTGGGATGGGGTGTCATAATTTCTTCTTTCTATCTTATGTCAAGTAAGACTGTGATCTTCCTGCTTTAGTTCATTCTCAGAACCCAGGATCATAGGTTTTTATTCTCAATAGAGACTTGCATATAATGACCTTACTGTCAACTTAAAATCTTGTTTTATTTTTTTTTCTTTCAG
Seq C2 exon
GATGGCCTATCCACAGCCAAACGTGCTAACACCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039906:ENSRNOT00000006553:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(4.8=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]