HsaINT0002915 @ hg38
Intron Retention
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:109681266-109682896:-
Coord C1 exon
chrX:109682719-109682896
Coord A exon
chrX:109681376-109682718
Coord C2 exon
chrX:109681266-109681375
Length
1343 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
TGTTTATTTTTATTATGTAGTTG
3' ss Score
6.12
Exon sequences
Seq C1 exon
TTAATTCTTGGGAATTATAAATGGATGAACTATCTTGAAGTGAATCGCAGAGTGAATAACTTTGGTAGTGGACTCACTGCACTGGGACTAAAACCAAAGAACACCATTGCCATCTTCTGTGAGACCAGGGCCGAATGGATGATTGCAGCACAGACCTGCTTTAAGTACAACTTTCCTC
Seq A exon
GTAAGTGCCTTGTGTTTTTGGAGGGGGGAGAGGAGGGTCTTTGCTTGCATGTGAGAATTGTTTTGAGATGCTCTTGTTTTCACAGTAGGTGTTGTTTAGCCATTTTACACATTAATTATGTCCATAATACGGCATGTAATATTGTGGCTAAAAGATATCCGATGACTCCTGTTAAGTATGGTAACTTGTAAGAACTAATATGGGAATTGGCAGCTTTAAGGGATGTGATTTACACTTTTATTTTCCAATTGGAAATGAATTGTAACTGAAAGAGTTGGAGTTTGGGGGTATTTTGGGGGGGTGATATACAAAGAGTAATGATTAAAAGAACAAAAAACCATTTCTCAGGATAATTCAAATTCATTGCTTCACTTTGAGACCTCTTATTTGACTTATTCTATTTTACGTGTGAAATATGCATGTGACAGCTGGAATTGGCATTAGATATGTTAGAAAGTAAAATTGAGTATATTTCTAATACTCAAGCATTTGTTGTTGCCATTGTTTAAGAAATAAACAATGTATTGTCACATACTAAGTACTCTGTTGTTTGTTGAATGAAATATAACACTGTAAGTTAGGATTATAGAGCTTAAATTTCAAACAAAAAATAGATAATATGAAAATGATCCCCTATGTACCCATTACCCACTTTCAACGATGAACAGCTTGTGAAAGTGGCTATTTTTAACCACATTGTTTCTGGTTACCAATCTAGAGCTGAATTTTCAGTTCTTTCTAAGTTTAGCAGATGTCCTTTGATTCTAACTGATCTTGGTTTATGTTATCTCTGGTGGCTCCTAAGGAGTAGATCTCCTTGATCTCTCTAATTAAGGTGTGGAGGTCACCAATCACATTGGACATTGGACTCACTAAAACAGCTTCTTAGAAGGAGTAAGAACATTATCTGTGGCTGATCTTATGACTTAAGATCCTCAAGATTTTCAAGGACTTATCCATTCTTTGGAGGCTATGGCCAATGAAAGTGTGTATCAAGAAGAAGCCCTAGCTGGGCCAGTCTGACCTGAATTAAGAGTTCAGCCAGTACCTATTGGCCTTGAGCATCTAAATTGACAGATTTTTGATCAGCTGTGGCAGTGCGAGTGTTTCTGGGTTTCTTCAGGTTTAGGAAGTGAGAGTTCTGGGAATTTGTAAGGAAAACTTTGGGCTCCCAGGGAGTTTGAAGCAAGGTTGAAGGATGGTAACAGAGACTATGAAATCAAATTAAAATATACAATGTCTTTGTGTCTCTAAGTGTAACTATTATTAAAGACTGACTTCAATAATATCCATTTCTAATAGATGTTTATTACTTAATATTTGTGTTTATTTTTATTATGTAG
Seq C2 exon
TTGTGACTTTATATGCCACACTTGGCAAAGAAGCAGTAGTTCATGGGCTAAATGAATCTGAGGCTTCCTATCTGATTACCAGTGTTGAACTTCTGGAAAGTAAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366:ENST00000348502:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAACTATCTTGAAGTGAATCGC
R:
AGTTTACTTTCCAGAAGTTCAACACT
Band lengths:
262-1605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development