HsaINT0003012 @ hg38
Intron Retention
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20781708-20785107:+
Coord C1 exon
chr16:20781708-20781787
Coord A exon
chr16:20781788-20784983
Coord C2 exon
chr16:20784984-20785107
Length
3196 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTATCTGGTTTTCTGAGAAGCTA
3' ss Score
2.55
Exon sequences
Seq C1 exon
ACACTCTCCAAGTACCCCATCACAGTCTTCTGTTCAGCACCAACTGTATACCGAATGCTTGTACAGAATGATATAACCAG
Seq A exon
GTAAGAAATGTTAGTAAATAGGCATCTAGTGGGGAGAGGGGAGAAGAGGAAGCTATAAAATAAAAGATCTTTCTGCCTGAAACATAGCTCCAAGCCAGTAGACACAGGATTTAGCAATCTCTCCTCTTCCTCTTTCTCCTTCTTGCCTGCATTCTGTAAATGATAATTACTGTGACCAGGGCAAGATCCCCCAAACAAGAAGAAAGTGAGGGTTCAGCTATGTTTATAGCTCTAAGCCCAGTGGTTATGGGTAAGAAGATGGTAAATCTTTTGGATGATGGCTTTCTCTGAGCTGAGAAAGTAGAGAACTTGTTTCTATTTGGAACCTTATCCCAGCAGATAGAAAAGAGGATGCATATCTTTTATTCTATTGCTGATTCCATTTGAAAGGGTTCATTGGTAATCCAAAAAGAAAAACAACCCCCGTTTCTCTTTGTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTCAATAGGGTTTTGGGAAACAGGTGGTGTTTGGTTACATGAATAAGTTCTTTAGTGGTGACTTCTGAGATTTTGGTGCTCCCATCACCCAAGCAGTATACACTGTACTCAATGTATAGTCTTTTATCCCTCACCCACCTCCCACCCTTTCCCCAGAGTCCCCAAAGTCCATTATATCATTCTTACGCTATTGCATCCTCATAACTCAACTCCCAGCAACCACTATTTTACTATATTCACAACACTCAATACTCTGGGTCTCCAGATGTAAGGGATCTTTTCCCCCACATTGACCAATTCTCCAACATCAGTTGAGTATCCTATGATTTAATTCAGTCTGACATTATCTCCGTGGAGGCAGCATCATATCCCACAGGTTAATGACTCAGTCCCACAAGACTCTTTCCCATCTCAAATGCTAATCACAAGTCCAGGCTGTCACCTGCGCATATGACCAAATGGCTACAAATCAGAGGTTCCCATGACCCTTCCTTGGGTTTAGTAATTTGCTATGATGGCTCACAGAGTGCAAGAAAACACTTACTTACATTTCCCAGCTTATTATAAAAGATATGATAAAAGTTACAGATGAATAGCTAGCCAGATGAAGAGGTACATAGGGTGAGGTCCACAAGGTCCCAAGTGCAGCAGCTTCTATCCCTGTGGAGTGGGGGTGCACTACCTTTCCGGCACGTGGTGCTCTCCAAACCTCATACTTCAGGGATTTTTTTGGAGGCTCCATTATGTAGGCATGATTGATTATTAAGTCAATCTCCAGCTCCTCTCCTTTCCCTGAAGGATGGAGGTGAGGCTGAAAGTGCCAAGCTTCTGTTCCTGGCTTAGTCTTTCTTGTGACCAACCCCTATACGGGAGCCCCATTGAGAGTCGCCTCATGAGAACAAAAGACAATTCTATTACCCAGGAAATTCCATGGAATTTAGAAGCTCTGTATCAGAAACTAGAGTCAAAGGCAAAATATTAGAACAAAAGATACTCCTAGCACACCCATCACTTGGGAAATTACAAAGGTTTTAGAAGCTCTGGGCCAGGAACCCAGGATGAAGACTCAGTACAGGTTGAGTATCCCTTATCCAAAATGCTTGAGACCAGAAGTCTTTTGGATTTCAGATTGTTTTGGATTTTGGAATATTTGCATTATACTGGTTGGGCTGCCCTAATCCAAAAACATGAAACCTGAAATCCTCCAATGAGCATTTCCTTTGAGCATCATGTTGGTACTAAAAAAGTTTCAGATTTTGGAGCACTTTGGATTTTGAATTTTCAGATTAAGGATACTCAACATCTATGTATTTCTTGTTATAGCTCATATCACAGGTAAATATATTTAAACTGATGTTATTTAATTATCGAATAGGAAATAATTCACCTGCCATAAAATTCAAAAGGTATATAAAAATACATAGTGAAAAGTCTTGCTTCAAACCTTGTCCCCAGTGACCCAGTCCTCTTCCATGGAGGCAAACTGAGTTTCCAGTTTCTTGTCTATTCTCCCTGAAAATACACAAACTGATACACATGTGTTCTCCCCGTCTCAATTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCGCCTCCTGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGCATGTAGGATTACAGGTGTGCACCACCATGCCTGGCTACTTTTTGTATTTTTAGTGGAGATGGGGTTCTGCCACGTTGGCCAGGCAGGTCTCGAACTCCTGATGTCAGGTGATCCGCCCACCTCTAACTCCCAAAGTGCTGGGATTACAGGTGTAAGCCACCACACCTGGCCTTTCCTTCTCTATTATAAACATAAATGGTATCACAAGATTCACACAGTTCTGCACCTTGCTTTTTTCCTCTAACAATACATTCTGGCACTGTGTTGTGCAATATGGTAGCCACTAACCACAGCTAGTTATTTCAATATAAATATTAAGTAAAATTAAAAATTCAATTCCTCAGTTATACTAGTCCTGTTTCTAGTGTTCAATATCCATATAGGGCTAGCATATACTGTAGTGGGTACAGCAGATTACAGAGTACTTCCATATAACAGAAAGTTCTACTGGGCAGCACTGTCCAAGAGCTTCCTCATTTTTCATAGCTGTATAGTATTCCATTGTATAAATATCCCACCATCAGTTTTACCAAACAATTGGTACTTTTCATTGCTGATTTAAAGTGTTATTATGGTGCTCACTTCAGCAGTACATACACTAAAATTGGAATGATACAGAGCAGATTAGCATGGCCCCTGCACAAGGATGACATGCAAATTTTTGAAGCATTCCATGAAAACATAAAAATAAAAACAAAATAAAATAAAATGTTATTATGGGGTACCTTCCCTAAGAACAGAATGACCTTCTTTGTAATAAATTATACCTCCACCACAAAAAGGGGGGTAAAGAAAAACTAGTATTTGGGGTATTCTAGTATCATTCTATGATATTAGAATGATTTATCTTTTTAATATCTTTATTTTTAATTTGTGTAGGTACTTAGTAGTTGTATATGTTTATGGGGTAAAATGGTTTGTTTTGTGCTAGGGAGAGGAATTAAAAAGCGACTAAAACATTTTATATTGAAGTTCATAAGAAATAATCCTTAATCTTCACTTCTCTCCATTTTTCCTCCTAAATCTAACTTATCTGGTTTTCTGAGAAG
Seq C2 exon
CTATAAGTTTAAAAGCTTAAAGCACTGTGTGAGTGCTGGGGAACCAATTACCCCTGACGTGACTGAAAAATGGAGAAACAAGACGGGCCTGGATATCTACGAAGGATATGGACAGACTGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187:ENST00000289416:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development