HsaINT0003945 @ hg19
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:1366]
Coordinates
chr9:136287120-136288287:+
Coord C1 exon
chr9:136287120-136287668
Coord A exon
chr9:136287669-136288220
Coord C2 exon
chr9:136288221-136288287
Length
552 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CATCTCTTTTTGTCTTGCAGAGT
3' ss Score
11.48
Exon sequences
Seq C1 exon
AACCACGATGTCTTTGGCACAGCCTCTCATCTGTCAGATGGGAGCGGGGACCCCGGAGAGGGAGTCAGCCGAGGTCCTGGCATTCCTTGTGAACCCCCGTCTGTGGGTTTCTGGTCCAGTGTCCCTTCTCCAGATTAGATGGCTTAGGCCTCCTCTAAGGGGGTGGGCGTGCACATCCGGAGAGCTGTCTGGTGTGCAGGACTGGGCTGCAGGTTACCCTGAACTGCAACCATCTTAGAGCAAGGCCCAGCTTGCAGCAGGAGGAGCTGCAGGCCGCCCACCCTAGCCACGGCCCCTGCCCTGGCAGGAAGCTTCCAAGAGTAAACACTGCCTAATCGTCCCGCCCAGTAGTGAGCAGGCCTGTCCCATTCCATACTGACCAGATTCCCAGTCACCAAGGCCCCCTCTCACTCCGCTCCACTCCTCGGGCTGGCTCTCCTGAGGATGCACCAGCGTCACCCCCGGGCAAGATGCCCTCCCCTCTGTGTGGCCGGAATCCTTGCCTGTGGCTTTCTCCTGGGCTGCTGGGGACCCTCCCATTTCCAGCAG
Seq A exon
GTGGGCTCATTTGCAGGAGCGGGGGTATTCTGGGAGCCTCTGGGTGGGGTATTCTGAGCTACCTGGGGCGAGGGGAGTGCCAAATAGCTGACTACATCAGCTTTGGGGTTTGCGCTGGGCAGGGGAGTCTGTACTTGGGGCTTTGGGGGATGAAGTGTGCTCACTGAAGAGGGAGTTGGTGTCTCAGTACGACCTGCTCATTCGGTGAAGCTGAACAGACAGATACTAGTTTGTCCCAAACTGTGTAGGTTGCTCTTCTCTGCCTCTCCCTTCCTCTCCCTGTCTCTGATTTCCCCCTCTCCTTCTTGGTTGGCCTCACCCACCTCCTGCCTCCTGTCTCCCTCTTCATCCATCTCTTTTTGTTCTTTTTTCTTTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTAAGACATGGGGTCTTGTTATGTTGCCCCAGCTGGTCTCAAACTCCTGGACTCAAGTGATCCTCCCACCTCGGTCTCCCCAAGTGTTAGGATTACAGGCCAGAGCCACTATGCCCGGCCCCATCCATCTCTTTTTGTCTTGCAG
Seq C2 exon
AGTTGTCTTCAGGCTTTGGAGCCACAGGCCGTGTCTTCTTACTTGAGCCCTGGTGCTCCCTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323-ADAMTS13:NM_139027:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTTAGAGCAAGGCCCA
R:
GCTCCAAAGCCTGAAGACAACT
Band lengths:
343-895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)